Pairwise Alignments

Query, 389 a.a., lipopolysaccharide assembly protein LapB from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., tetratricopeptide repeat protein (RefSeq) from Shewanella sp. ANA-3

 Score =  389 bits (1000), Expect = e-113
 Identities = 195/389 (50%), Positives = 268/389 (68%), Gaps = 3/389 (0%)

Query: 1   MLEILFLLLPIAAAYGWYMGHRSAQQDKQKQSHQISRQYVTGLNLLLSDQSDKAVDHFIE 60
           MLEILFLLLPIAA YGWYMG RS +Q++  Q  Q+SR Y TGLN LLS++SDKAVD FI 
Sbjct: 1   MLEILFLLLPIAAGYGWYMGRRSIRQNQSNQRKQLSRDYFTGLNFLLSNESDKAVDLFIS 60

Query: 61  LLQVDNETIDTHLALGNLFRSRGEVDRAIRIHQNLISRSGLTIDQKNLALQQLAKDYMVS 120
           +L VD+ETIDTHL+LG+LFR RGEVDR+IRIHQNLI+R  LT +Q+++A+ +L KDY+ +
Sbjct: 61  MLDVDDETIDTHLSLGSLFRKRGEVDRSIRIHQNLIARPTLTNEQRDIAMMELGKDYLAA 120

Query: 121 GFLDRAEKIFEQLIDEPEHRESALQQLTAIYQQTREWHKAIECATALVKLGRKRMKVNIA 180
           GF DRAE+IF  L+ + +H E +  QL AIYQ  +EW KAI+    L +  ++ +K  IA
Sbjct: 121 GFYDRAEEIFLNLVSQDDHSEESETQLIAIYQVIKEWQKAIDITKRLSRKRQQVLKPIIA 180

Query: 181 HFYCELAMLEKADSNDNKAIQLFKKALQEDPKCVRATISLGKLYLQNEDYQKTIDHLEMV 240
           HFYC+LA      S+D   I+L  +AL++DPKC RA ++L K +L  +DY +    L  +
Sbjct: 181 HFYCQLA---DETSDDADKIKLLLQALKQDPKCGRALLTLAKKFLDAKDYNQCKSMLMAL 237

Query: 241 LEQDIDFIGEVLNTLAECYHHLGREQDLITFLRRCIANKAGVSAELMLAQLVAQHEGIAA 300
            + DI+   + L T  + Y     ++     L   +A  AG S  + LAQ +   + I  
Sbjct: 238 KKADIELFADALPTAKQVYRDTQDKEGYQELLAGAMAEGAGASVVVALAQHMISLDEIKT 297

Query: 301 AQEILTRQLVKNPTMKGFYRLIDYHIAEAEEGRAKASLSTLQRLVGEQLKVKPHYRCRKC 360
           A+ ++   L ++PTMKGF  L+  H+ +AEEG+AK SL+ L++LV +Q+K +P YRC++C
Sbjct: 298 AENMVLDALYRHPTMKGFQHLMQMHLRQAEEGQAKQSLTMLEQLVEQQIKFRPSYRCKEC 357

Query: 361 GFSTHSLYWHCPSCKNWGSIKPIRGLDGE 389
           GF +H+LYWHCPSCK WG+IK IRGLDGE
Sbjct: 358 GFPSHTLYWHCPSCKKWGTIKRIRGLDGE 386