Pairwise Alignments

Query, 254 a.a., DNA repair protein from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  141 bits (355), Expect = 2e-38
 Identities = 78/257 (30%), Positives = 150/257 (58%), Gaps = 10/257 (3%)

Query: 5   LIIALVAILLILVLGYNIMLQYRVKVESAKKQESSRYVAIIDATEDLIGNAHHLPFSKEL 64
           L++ L+  LL+LV+G N++ Q + + E+ ++ E +R  AIID TE+++      P S  L
Sbjct: 5   LVLILIGALLLLVIGINVIQQQKERAEAERRTELARQRAIIDETENVLSCTGMFPCSTNL 64

Query: 65  LVCLNNRILDALQSMYDLD-PKNKQLAQRIENMKGQINHLQNNHPGGEST-SFKVPSSDK 122
           ++ L  R+ +AL     L  P+     +R+ ++ GQ+ +LQN      +  SF++P +DK
Sbjct: 65  VLILYRRVQEALSQSVSLGGPQTADYQRRLTDLTGQVENLQNAQKQTPAIESFRLPDTDK 124

Query: 123 QAIIMLKLVKRLRDTIRSEHNKGRFETQAYVAENARLETIQIRINIENVIKRANDSILRG 182
           Q + ++K++K+L+  +R+EHNKG+ +   +  E AR++++Q+RIN+++++ RA  +    
Sbjct: 125 QILDLVKVLKKLKAILRAEHNKGKVDPNIFAQEEARVDSLQLRINVDSMLSRARSACFMK 184

Query: 183 QPGTAIQLLRKGIDVLS-----SKNDSYSNQAREKLQTMYDELEQKRQNKSASDLQQIEE 237
           Q G+A Q++ K +  L      + ND +  +  ++ + + DE+   ++    +  QQ  +
Sbjct: 185 QYGSAKQMVTKALATLHTIKGLTPNDPFIAKKVDEAKLLLDEIMGAQKMAQPNAPQQKSD 244

Query: 238 NERKSDMDVLFGEKKKW 254
            +   D+DVLF  KKKW
Sbjct: 245 ED---DIDVLFQPKKKW 258