Pairwise Alignments

Query, 254 a.a., DNA repair protein from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  138 bits (348), Expect = 1e-37
 Identities = 78/262 (29%), Positives = 153/262 (58%), Gaps = 11/262 (4%)

Query: 1   MNIGLIIALVAILLILVLGYNIMLQYRVKVESAKKQESSRYVAIIDATEDLIGNAHHLPF 60
           M   L++ L+  LL+LV+G N++ Q + + E+ ++ E +R  AI+D TE ++ N   +P 
Sbjct: 1   MTFTLVLILIGALLLLVIGINVIQQQKERAEAERRVEFARQRAILDETETVLSNTGMIPC 60

Query: 61  SKELLVCLNNRILDALQSMYDLDPKNKQ--LAQRIENMKGQINHLQNNHPGGEST-SFKV 117
           S  +++ L  R+ DAL+    L    +Q    +R+ ++K QI+ LQ++ P   +  +F++
Sbjct: 61  STHIILVLYRRVQDALELATTLSTSQQQADFQRRLADIKNQIDSLQSSPPQVPAIENFRL 120

Query: 118 PSSDKQAIIMLKLVKRLRDTIRSEHNKGRFETQAYVAENARLETIQIRINIENVIKRAND 177
           P +DKQ +++++ +K+L+  +R+EHNKGR +   +  E  R++++Q+RIN+++++ RA  
Sbjct: 121 PDNDKQILVLVQTLKKLKAILRAEHNKGRVDPAVFGQEENRIDSLQLRINVDSMLSRARA 180

Query: 178 SILRGQPGTAIQLLRKGIDVL-----SSKNDSYSNQAREKLQTMYDELEQKRQNKSASDL 232
           +    Q G++ Q++ K +  L      + ND +  +  ++ + + DE+    Q  SA   
Sbjct: 181 ASFMKQYGSSKQMVTKALATLHAIKAQTPNDPFIARKVDEAKMLLDEI-MGAQKLSAPSA 239

Query: 233 QQIEENERKSDMDVLFGEKKKW 254
            + +  E   D+D+LF  KKKW
Sbjct: 240 PKPKNEE--DDIDMLFQPKKKW 259