Pairwise Alignments

Query, 254 a.a., DNA repair protein from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  139 bits (351), Expect = 4e-38
 Identities = 79/262 (30%), Positives = 151/262 (57%), Gaps = 11/262 (4%)

Query: 1   MNIGLIIALVAILLILVLGYNIMLQYRVKVESAKKQESSRYVAIIDATEDLIGNAHHLPF 60
           M   L++ L+  LL+LV+G N++ Q + + E+ ++ E +R  AIID TE ++ N   +P 
Sbjct: 1   MTFTLVLILIGALLLLVIGINVIQQQKERAEAERRIEFARQRAIIDETETVLSNTGMIPC 60

Query: 61  SKELLVCLNNRILDALQSMYDLDPKNKQ--LAQRIENMKGQINHLQNNHPGGEST-SFKV 117
           S  +++ L  R+ +AL+    L    +Q    +R+ ++K QI  LQ+N P      +F++
Sbjct: 61  STHIILVLYRRVQEALEIATTLSASQQQSDFQRRLTDLKSQIETLQSNTPQMPPIENFRL 120

Query: 118 PSSDKQAIIMLKLVKRLRDTIRSEHNKGRFETQAYVAENARLETIQIRINIENVIKRAND 177
           P +DKQ +++++ +K+L+  +R+EHNKGR +   +  E  R++++Q+RIN+++++ RA  
Sbjct: 121 PDNDKQILVLVQTLKKLKAILRAEHNKGRVDPNVFAQEENRIDSLQLRINVDSMLSRARA 180

Query: 178 SILRGQPGTAIQLLRKGIDVL-----SSKNDSYSNQAREKLQTMYDELEQKRQNKSASDL 232
           +    Q G++ Q++ K +  L      + ND +  +  ++ + + DE+    Q  SA   
Sbjct: 181 ASFMKQYGSSKQMVTKALATLHAIKAQTPNDPFIARKVDEAKMLLDEI-MGAQKLSAPSA 239

Query: 233 QQIEENERKSDMDVLFGEKKKW 254
            + +  E   D+D+LF  KKKW
Sbjct: 240 PRPKNEE--DDIDMLFQPKKKW 259