Pairwise Alignments

Query, 324 a.a., HTH-type transcriptional regulator CysB from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., Cyn operon transcriptional activator from Pseudomonas fluorescens FW300-N2E2

 Score =  103 bits (256), Expect = 7e-27
 Identities = 81/291 (27%), Positives = 144/291 (49%), Gaps = 9/291 (3%)

Query: 1   MKLQQLKYIVEVVNHNLNVSATAENLYTSQPGISKQVRLLEDELGIQIFERSGKHLTQVT 60
           M  + ++Y + V  H L+ +  A  L+ SQP +S+QVR LE+ LG Q+F+RSG+  T++T
Sbjct: 5   MLARHVQYFLAVAEH-LSFTKAAAALHVSQPALSQQVRQLEESLGAQLFDRSGR-TTRLT 62

Query: 61  PAGEHIVRIATEILSRVESIKAVAAEHTHPEMGTLNISTTHTQARYALPEVIKGFTKRYP 120
            AG+  +  A     ++   K+   + +    G+L ++ T T   Y +  VIK F  RYP
Sbjct: 63  DAGDVYLLYARRAYQQLREAKSAIHDVSDLTRGSLRLAVTPTFTTYLVGPVIKAFHSRYP 122

Query: 121 RVSLHMHQGTPTQMSEAIAKGTANFAIATEALHLYQ-DAIMLPCYHWNRSIVVPKDHPLT 179
           +++L++ + +  ++ E +  G  +  IA + ++    DAI  P  +   ++VV + H L 
Sbjct: 123 KITLNLKEISQERIEELLLAGELDAGIAFDEINTPNIDAI--PLLNETLALVVSRQHRLA 180

Query: 180 KKEQVTIEDLAAYPLVTYVFGFTGRSELDSAFNRVGMTPKVVFTATD-ADVIKTYVRMGI 238
           ++  + ++DL A  L+     F  R ++D  F    + P+V   A     VI+   R  +
Sbjct: 181 EERSIGLQDLNAESLILLSPEFATREQIDRYFRTHAIHPQVQMEANALGAVIEIVRRTNL 240

Query: 239 GVGVIASMAVDKKQDTDLVAIDASHIFSASTTSIGFRRGTFLRSYMFDFME 289
              + A +A+      DLVAI         T  +  R+  F  + M  F+E
Sbjct: 241 STLLPAKIAL---AHDDLVAIALEPERLQRTAVLMRRKDAFQSAAMRVFIE 288