Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  204 bits (518), Expect = 1e-56
 Identities = 149/478 (31%), Positives = 244/478 (51%), Gaps = 30/478 (6%)

Query: 216 AVNQNKKAVTHLNYAYRGLTTQMPQLKERFDEPVAKFTQ-DIGQKGGVLDQHNEYLQARA 274
           A++Q+ K +      YRG   QM    +   E +A + +  +  +G  L  ++++ Q  A
Sbjct: 73  ALDQDPKNIP----VYRG---QMDTRDKELGEKIAAYEKLVVTPEGRAL--YDQFKQTFA 123

Query: 275 ALYNNIAN---LANEV--DKAMTILGAFNQTATDDLNQSLAEAGSVYQQG---------- 319
           A    IA    LA +   D+ + +L    +T  D   + L +   ++ +           
Sbjct: 124 AYRTGIAQSFTLAEQGRRDELIKLLLVDMKTVVDGSGKQLNDLAELFSKQVSIESQKSQE 183

Query: 320 --AIKAVVIGIAVVLLATA---IGYHIAHSVREPVTRILKTLESLTQGNMTQRIEIRYNN 374
             A   +++ + VVL A A   +   +  S+ +P+   L   ES+ +G++T+ IE   N+
Sbjct: 184 HYANSRMIVSLFVVLAALATVVLAMLLTRSIVKPLGAALNAAESVARGDLTRPIETHGND 243

Query: 375 EFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAA 434
           E SRL + + ++  NL + L  ++ ++  L   A      +L + + L  Q  +    A 
Sbjct: 244 EVSRLLKALATMQQNLRETLQGISGSAAQLATAADELNAVTLDSTHSLQQQNNEIEQAAT 303

Query: 435 AMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGD 494
           A+TEM  +V+EVA +A ++    +Q   ++  G+Q +S  +  I  L + +  +   V  
Sbjct: 304 AVTEMTTAVEEVARNAVSTSDATRQSSESASLGQQRVSDTVDAIGALASDVQVTGGLVQS 363

Query: 495 LRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQS 554
           L   S  IG +LDVIR IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT QS
Sbjct: 364 LANQSQDIGKVLDVIRAIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRALAYRTQQS 423

Query: 555 TSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHI 614
           T EIE M+  ++S ++ A   +++       ++  A  A  A++ I A + EI   +  I
Sbjct: 424 TQEIEQMVQGMRSGATQALDSMQASSSRAASTLAMAERAGDALQTITASVNEIHERNLVI 483

Query: 615 SQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
           + AA EQ +    + R++ +I  +S  S     Q + +S  L+ LAN    +V RF++
Sbjct: 484 ASAAEEQAQVAREVDRNLVNIRDLSVRSASGADQTSASSHELSQLANSLRTMVQRFQV 541