Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  202 bits (514), Expect = 4e-56
 Identities = 186/681 (27%), Positives = 314/681 (46%), Gaps = 46/681 (6%)

Query: 17  RMYAGFALIIIMFVVTVAIM-LRGMNQIHSNFESVSTAALPLVSLSNQTSVQLLSA-DKS 74
           R  A FA++ I+ V+ + ++ LR  N ++++ ++V+   +    L   T V   S   ++
Sbjct: 15  RFPAKFAVLAIIIVIPLIVLGLRVFNSLNASIDTVAQERVGREYLQLTTPVLRTSMLQRA 74

Query: 75  FKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITELKQLE--TRY 132
             + L   D S      Q+   ++ + ++ LA L+       +  +    +++L   TR 
Sbjct: 75  ASNRLLAGDASAA----QDVISNRAQLETALANLADMDARQGQQLETENRVQRLRESTRS 130

Query: 133 FSEADLAMDNYQAMFAAQASVQKSTREFQRLHSELSVGMKEFVDDNDSISVKVMAKSYF- 191
             ++     +   +FA        T  F    S  S GM   V D D  S+ ++  S   
Sbjct: 131 LMDSIKPGLSQDEVFAQWNEQLAQTLNFIYYVSATS-GM---VLDEDYASLFLIDLSTIR 186

Query: 192 ----------IKLKDAEVITSDALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQL 241
                     I+   A ++T   L+ S    +E  +    +    L  + R L  + P+L
Sbjct: 187 MPREINVAGQIRGITAGLVTGQGLSVSMRGSLESLLKIELQFRAELEQSIRLLKRRSPEL 246

Query: 242 KERFDEPVAKFTQDIGQKGGVLD----------QHNEYLQARAALYNNIANLANEVDKAM 291
             R  +P+   T  +    G L           Q  + L AR  +   ++ L    D+  
Sbjct: 247 AARISDPITAATAAMDSFRGDLHAYVKGTEFSVQQGQALSARGNVV--VSGLYKAQDEIQ 304

Query: 292 TILGAFNQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTR 351
           T L     T  D L         V Q+  + A+ + + ++LL       I  ++R  +  
Sbjct: 305 TALQNELNTRYDAL---------VLQREVVIAMCVIMGLLLLYAFCS--IYRALRLTIDS 353

Query: 352 ILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTN 411
           +L     L +G+++ R+ +   +E + ++  +N +AD     +  ++  S +LT  AS  
Sbjct: 354 LLGVTRRLGEGDLSARVAVVSKDEVADIANGLNLMADAFASSISHMDRTSYELTDVASRL 413

Query: 412 QTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIM 471
             +   A+  +N+Q+ +T  VA A+ EM  SV +VA + + +     +  TAS +G +IM
Sbjct: 414 GASIGLAKQSMNAQQAETEQVATAINEMTASVADVAQNTEGAALAADEANTASRNGLRIM 473

Query: 472 STNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAG 531
               STI+ L   +  S + V  L   S  IG ++ VI  IA+QTNLLALNAAIEAARAG
Sbjct: 474 HQAHSTIQALAEEVELSAQKVQALALHSQSIGGVIQVISTIADQTNLLALNAAIEAARAG 533

Query: 532 EQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQAS 591
           EQGRGFAVVADEVR LA RT  ST EI  +I  LQS++  A + +++  Q     +  AS
Sbjct: 534 EQGRGFAVVADEVRTLASRTQASTEEIRGIIQQLQSATDAAVQQMQAGQQKAHACISAAS 593

Query: 592 HANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQ 651
            A+ ++  I   +  I  M+T I+ AA +Q+  +  I R++ +I + S      +   A 
Sbjct: 594 DASGSLSSISQGVERIVEMNTQIASAAVQQHAVSEDINRNVMEIRNSSGTLMLGIDNNAV 653

Query: 652 TSANLTALANQQSELVHRFKL 672
           T+  L  +A+    +V RFKL
Sbjct: 654 TADELARVASDMRNVVARFKL 674