Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  202 bits (514), Expect = 4e-56
 Identities = 172/675 (25%), Positives = 301/675 (44%), Gaps = 58/675 (8%)

Query: 13  SVIRRMYAGFALIIIMFVVTVAIMLRGMNQIHSNFESVSTAALPLVSLSNQTSVQLLSAD 72
           SV  ++  GF  ++    V   +    ++++    + +        +L+N    +L    
Sbjct: 9   SVNMKLALGFGTVLFFTAVLALVGWTSLDKLIYRTDRIGDITRLSDNLTNLRVARL---- 64

Query: 73  KSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITELKQLETRY 132
              +  LT  D +    M+ +    K + QS+L      S N+P   +P+ EL  +   Y
Sbjct: 65  ---QYMLTDGDETAAQNMQSKLDVFKAQQQSLLV-----SFNNPVNLKPLRELADVTRDY 116

Query: 133 FSEADLAMDNYQAMFAAQASVQKS-----TREFQRLHSELSVGMKEFVDDNDSISVKVMA 187
               + ++++ +A++ A A V+       T   Q + S  +  ++    D     +  +A
Sbjct: 117 ----EASLNSMRAVYQAGAKVRNEMTANGTAAMQAVESLNNAVLQIDPADPARFDLAQLA 172

Query: 188 KSYFIKLKDAEVITSDALASSDVAFVEKAV-----NQNKKAVTHLNYAYRGLTTQMPQLK 242
            S                A  D+  V   V     N N K  T          + + + K
Sbjct: 173 NS----------------ARQDLVLVRYEVRGYTGNPNDKTETAAFQQLDSAISHLDRFK 216

Query: 243 ERFD----EPVAKFTQDIGQKGGVLDQHNEYLQARAALYNNIANLANEVDK-AMTILGAF 297
             F     E +A+F   +      +D      Q  A++  ++      + K    + G  
Sbjct: 217 AAFGPANREQIAQFESALRNYRSSVDVFKATTQTAASVRKDLTTQGATIVKLGEELYGLQ 276

Query: 298 NQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTRILKTLE 357
            Q   +D     A A S+     I  VV+ + + +LA  I   I   +  P+   L  +E
Sbjct: 277 MQMGKEDT----AHARSLQ----IGCVVLVMLLGILAAVI---ITRQITRPLRDTLAIVE 325

Query: 358 SLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQTTSLS 417
            +  G++T    +   +E   L + I  +   L +++  +      + + A      +  
Sbjct: 326 RIASGDLTHTEAVTRRDELGVLQQGIQRMGTTLRELISGIRDGVTQIASAAEELSAVTEQ 385

Query: 418 AQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNIST 477
               +NSQ+ +T  VA AM EM+ +V EVA +A+ +       +  +  G +++   I  
Sbjct: 386 TSAGVNSQKVETDQVATAMHEMSATVHEVARNAEQASVAASDADQQARDGDKVVGEAIQQ 445

Query: 478 IRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGF 537
           I +L   ++ S +A+  L + S +IG ++DVI+ +AEQTNLLALNAAIEAARAGE GRGF
Sbjct: 446 IERLAAEVVRSSDAMNVLEQDSDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGF 505

Query: 538 AVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHANSAM 597
           AVVADEVR LAQRT QST EIE +++ LQ+ +   S ++       + SVE    A +++
Sbjct: 506 AVVADEVRGLAQRTQQSTEEIEGLVAALQNGTRQVSGIMLGSRTLTDSSVELTRRAGTSL 565

Query: 598 EEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLT 657
           E I   +  I  M+  I+ AA +Q+     I+RSI ++  +S+++ +A  + A +S  L 
Sbjct: 566 ESITRTVSSIQAMNQQIAAAAEQQSSVADEISRSIVNVRDVSEQTAEASEETAASSVELA 625

Query: 658 ALANQQSELVHRFKL 672
            L  Q   +V  F++
Sbjct: 626 RLGGQLQMMVSHFRV 640