Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  212 bits (540), Expect = 3e-59
 Identities = 155/518 (29%), Positives = 261/518 (50%), Gaps = 34/518 (6%)

Query: 185 VMAKSYFIKLKDAEVITSDALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQLKER 244
           V A S   K++ A    ++ LA S+V  ++      + ++     +YR L  + P+ +++
Sbjct: 28  VFALSQMSKIRSA----TEVLADSNVPSIKSLDRFAEVSIRLRVLSYRLLVNRDPETQQK 83

Query: 245 FDEPVAKFTQDIGQKGGVLDQ----------HNEYLQARAA---LYNNIANL--ANEVDK 289
             E +A   + I     V ++          +++Y+Q       L + +  L  AN +D+
Sbjct: 84  TIELMAMRNKQITDAQAVYEKLISTPDERNLYSQYVQLLGQYRQLEDRLKTLTRANNIDE 143

Query: 290 AMTILGAFNQTATDDLNQSL--------AEAGSVYQQGAIKA-----VVIG--IAVVLLA 334
              +L     + +D +N  L        A+   V +Q +I+      +VIG  IA  LL 
Sbjct: 144 LQGLLNNEMVSNSDQMNVVLRKLVDINTAQLNEVKEQASIEYDSAFNMVIGLLIAATLLT 203

Query: 335 TAIGYHIAHSVREPVTRILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDIL 394
               + +  S+  P+   L   E++ QGN+T+ I I   +E  RL   + ++ D L D L
Sbjct: 204 LVFAWMLIKSITTPIATALLAAETIAQGNLTRPISIDGTDEAGRLLLAMKTMQDKLRDTL 263

Query: 395 VKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSL 454
             ++ ++  L + A      +  +   L  Q ++    A A+ +M  +V+EVA +A ++ 
Sbjct: 264 QGISGSATQLASAAEELNAVTDESARGLVQQNDEIEQAATAVNQMTSAVEEVARNATSTS 323

Query: 455 AMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAE 514
              +   T++  GR ++   +S I ++   +  + E +  L   S  IG +LDVIR +A+
Sbjct: 324 QASRSAATSAGDGRDLVQETVSAIERMSGDVQGTAELIISLANESRDIGKVLDVIRGLAD 383

Query: 515 QTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASK 574
           QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT QSTSEIE MIS++Q+ +  A  
Sbjct: 384 QTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMISSIQTGTEQAVS 443

Query: 575 VIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIED 634
            + +  +  E ++  A  A  A+  I + + EI+  +  I+ AA EQ +    + R++ +
Sbjct: 444 SMRNSTERAESTLNIAKGAGQALNTINSAVEEINERNMVIASAAEEQAQVAREVDRNLVN 503

Query: 635 INHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
           I  +S +S    +Q +  S  L+ LA   + +V RF L
Sbjct: 504 IRDLSAQSTNGANQTSAASTELSRLAIDLNGMVARFAL 541