Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 661 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  251 bits (640), Expect = 1e-70
 Identities = 185/677 (27%), Positives = 323/677 (47%), Gaps = 34/677 (5%)

Query: 13  SVIRRMYAGFALIIIMFVVTVAIMLRGMNQIHSNFESVSTAALPLVSLSNQTSVQLLSAD 72
           ++++R+  GFA+++++ +    I  +  + I      ++  + PL   +++  V +L A+
Sbjct: 2   TILQRVIGGFAVLVLLLLAMAGISYQSTHSISDRISVITGQSAPLSRAASELYVHVLRAN 61

Query: 73  KSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITELKQLETRY 132
           ++    L + D   +D  +Q F  S  RF  +L        +  EL   + + +QL   Y
Sbjct: 62  QALLGILVSTDPKQIDDGKQPFNDSMTRFNQLLDSTPAYIGDRAELRDNLNQQRQLSAAY 121

Query: 133 FSEAD--LAMDNYQAMFAAQASVQKSTREFQRLHSELSVGMKEFVD-DNDSISVKVMAKS 189
             +A   +A      + A Q+ V +     Q   ++L+  +++++  + ++ S + +A  
Sbjct: 122 AEQAQTLIASHRQHVLQALQSRVLQGYSSSQG--AQLTGYLRDYIARERNAGSAETVAAG 179

Query: 190 YFIKL---KDAEVITSDALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQLKERFD 246
             + L   K  E + + A A+ ++  +++ +N   + ++      R L    P+      
Sbjct: 180 EKLLLDVGKSYEGLAAHA-ATPNIQTLQRVLNLQDEVISTRT---RELIAADPRAGRIAS 235

Query: 247 EPVAKFTQDIGQKGGVLDQHNEYLQARAALYNNIANLANEVDK-----------AMTILG 295
             V +   D+    GV              Y   A LA +VDK            +  +G
Sbjct: 236 VMVNRLLNDLTGSDGVYQA-----------YRQEAALAEQVDKQRQAAETRLQATLGKIG 284

Query: 296 AFNQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTRILKT 355
            F   +    N++ A A S         ++  +  V+ A  IG  +A S+R P+    + 
Sbjct: 285 EFGNQSLAVANEAKAGADSTIATSLSLLLIACLLAVMAAAIIGTWVAFSLRRPLAAFREV 344

Query: 356 LESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQTTS 415
           L++LT G+M  R ++   +EF  L  ++N    +L     +L  ++D L  TAS N   S
Sbjct: 345 LKTLTSGDMRVRFDVSRRDEFGELGGYLNEFTQSLQQTFRQLIGSADTLALTASQNAQIS 404

Query: 416 LSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNI 475
                 ++ Q+++ +S A+AM EM  +V+EVA  AQ++   V      +   ++ ++  I
Sbjct: 405 EQTTRVVDEQKDRLNSAASAMNEMESTVEEVARRAQDTRGAVDSTSELTGKVQKRVAETI 464

Query: 476 STIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGR 535
             IRQ   ++ ++     +L+K    I  I+D IR IAEQTNLLALNAAIEAARAGEQGR
Sbjct: 465 VNIRQQAEQVNKASAVTDELQKYGQNIDGIVDAIRTIAEQTNLLALNAAIEAARAGEQGR 524

Query: 536 GFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHANS 595
           GFAVVADEVR LA RT  STSEI+ MI  +QS    A +V+       +  V  AS A+ 
Sbjct: 525 GFAVVADEVRSLASRTQTSTSEIQEMIGQMQSKIHSAVEVMNESQIQSDHCVTLASGADQ 584

Query: 596 AMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSAN 655
            + E+   +  I  M+  I+ A  +Q+ T    +R +  IN  + ++     Q A +S +
Sbjct: 585 LLVEMGEAVDVIRDMNIQIAAATEQQSATVQETSRMVTHINDSAQQAADGAEQSAISSQD 644

Query: 656 LTALANQQSELVHRFKL 672
           L+ +A  Q EL+H F +
Sbjct: 645 LSKMARDQRELLHHFSV 661