Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  221 bits (564), Expect = 6e-62
 Identities = 193/687 (28%), Positives = 315/687 (45%), Gaps = 68/687 (9%)

Query: 1   MSDFRGREIMQGSVIRRMYAGFALIIIMFVVTVAIMLRGM--NQIHSNFESVSTAALPLV 58
           MS    + +   SV  ++  GF L+++M   T+ I   G   NQ   +     TA   + 
Sbjct: 1   MSRGLSKSLANASVSLKLAIGFGLVLLM---TLMISATGWFSNQALIDRGDRVTAIAEVN 57

Query: 59  SLSNQTSVQLLSADKSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPEL 118
            L+ Q  +  +S +  +                   A++  + +S L EL  A      L
Sbjct: 58  ELTLQLRINRMSYEVLYN------------------AETAAKVRSTLDELDAALQTARNL 99

Query: 119 AQPITELKQLETRYFSEADLAMDNYQAMFAAQASVQKSTREFQRLHSELSVGMKEFVDDN 178
            +    L+ L+ +  +  D     Y+  F    S    TRE  R  S++     + VD  
Sbjct: 100 LRSPENLQLLDVQIQATRD-----YRQSFE-DMSKAIDTREASR--SQMGENADKAVDQA 151

Query: 179 DSISVKVMAKSYFIKLKDAEVITSD-ALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQ 237
           + I              +AE++  D  LA + +  V K + Q +  V    Y Y G    
Sbjct: 152 NRI--------------EAELLKEDNILAFNGIVGVSKLIQQARFQVR--GYTYSGRPDF 195

Query: 238 MPQLKERFDEPVAKFTQDIGQKGGVLDQHNEYLQA--------RAAL--YNNIANLANEV 287
                +  D+ V          G +   ++  LQ         RAA+  Y +    +   
Sbjct: 196 EKDANKAIDDAVTGINT---LAGDISSTYSPMLQQAIAGLNGYRAAVGKYRDAQAASKAA 252

Query: 288 DKAMTILGAFNQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIG----YHIAH 343
              MT LG      ++DL   +          + K+V + IA   LA  +G    + I  
Sbjct: 253 LDKMTTLGVSMLATSNDL---ITRQNKSRDADSAKSVQMIIAATALAMVLGILAAWVITR 309

Query: 344 SVREPVTRILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDD 403
            +  P+   L+ +E +  G++++ + +   +E  +L   I  +  +L +++  +      
Sbjct: 310 QITTPLQETLEVVERVASGDLSRNLNVDRKDELGKLQATIQRMTVSLRELVGGIRDGVTQ 369

Query: 404 LTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETA 463
           + + A      +      +NSQ+ +T  VA AM EM  +VQEVA +A+ +       +  
Sbjct: 370 IASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQEVARNAEEASEAAVAADRQ 429

Query: 464 SESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNA 523
           +  G ++++  I+ I +L + +  S EA+G L++ S +IGS+LDVI+++AEQTNLLALNA
Sbjct: 430 ARDGERVVNEAIAQIERLASAVGNSSEAMGALKQESDKIGSVLDVIKSVAEQTNLLALNA 489

Query: 524 AIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDM 583
           AIEAARAGE GRGFAVVADEVR LAQRT +ST EIE++I+ LQS +  A+ V++S  +  
Sbjct: 490 AIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEALIARLQSGTQQATTVMDSSRELS 549

Query: 584 ELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESY 643
             SVE    A  ++  I   +  I  M+  I+ AA EQ+ T   I RSI ++  +S+++ 
Sbjct: 550 TSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAAEEQSATAEEINRSIINVRDVSEQTS 609

Query: 644 QAMSQIAQTSANLTALANQQSELVHRF 670
            A  + A +S  L  L N    LV RF
Sbjct: 610 AASEETAASSVELARLGNHLQVLVSRF 636