Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 649 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  220 bits (560), Expect = 2e-61
 Identities = 196/681 (28%), Positives = 319/681 (46%), Gaps = 64/681 (9%)

Query: 16  RRMYAGFALIIIMFVVTVAIMLRGMNQIHSNFESVSTAALPLVSLSNQTS---VQLLSAD 72
           +++Y  F ++I++ +V      RG+ +   NF    T    L S SN  S     LL A 
Sbjct: 9   QQLYYSFGVVIVLLLVVTVAGYRGLTEGFKNF----TEYRLLASSSNAASEAEATLLRAQ 64

Query: 73  KSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITELKQLETRY 132
                +L T D +           + Q FQ  +AEL+Q   +  EL     EL       
Sbjct: 65  VDVFRYLNTPDNT-----------TYQSFQKNIAELNQDISHAKEL-----ELDAGRDSL 108

Query: 133 FSEADLAMDNYQAMFAAQASVQKSTREFQR-LHSELSVGMKEFVDD--------NDSISV 183
            ++AD  + NY + F A      +  +  R L     + M+E V D         D+  +
Sbjct: 109 LAQADGLVKNYASTFEAITGDFAARNQVVRDLLDPAGLSMRENVTDVITAMYQEGDADGL 168

Query: 184 KVMAKSYFIKLKDAEVITSDALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQLKE 243
            V A+S   KL  A +  S+ L S+     ++A+ +    ++ L+    GL +       
Sbjct: 169 FVAARSQE-KLMLARLFASNFLISNREEDYKRALQE----LSALDGTINGLKS------- 216

Query: 244 RFDEPVAKFTQDIGQKGGVLDQHNEYLQARAALYNNIANLANEVDKAMTILG----AFNQ 299
                V   T    +  G+     +Y  A  A+Y  I N    +D+ + ++G    A  Q
Sbjct: 217 -----VESATVIADKVEGIDTGRTQYRDALKAVYGIIQNQNGRIDEGLNVIGPKVAAVLQ 271

Query: 300 TATDDLNQSLAEAGSVYQQGAIKA----VVIGIAVVLLATAIGYHIAHSVREPV----TR 351
                + Q   E G   QQ +  A    VV+ IA +L+A  +   +  ++R PV      
Sbjct: 272 EYNKAIEQQQGELGLYAQQKSENAIDTVVVVAIAAMLMAIWLAITVVRAIRRPVGGEPRE 331

Query: 352 ILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTN 411
           I      +  GN+ Q      +         +N   DNL  I+ +LN AS  L  ++S  
Sbjct: 332 IASIAREIAGGNLGQNFLREGSTGIYAAMAEMN---DNLRRIVSELNDASRTLGDSSSGM 388

Query: 412 QTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIM 471
              +  ++    SQ +Q +  A+AM EM H+V ++A +AQ +  M  + +  ++ G  ++
Sbjct: 389 LGVTEESRKNSESQADQLAHTASAMQEMTHTVDDIARNAQRASEMASEADHHAQEGMGVV 448

Query: 472 STNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAG 531
                +I  L   + +    + +L K +  +GSILDVIR IAEQTNLLALNAAIEAARAG
Sbjct: 449 EDTRRSIMVLVDNITDVSGIIENLEKETENVGSILDVIRGIAEQTNLLALNAAIEAARAG 508

Query: 532 EQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQAS 591
           EQGRGFAVVADEVR LA RT  ST EI+++I  LQ+ S  + + +   + +   + E+A+
Sbjct: 509 EQGRGFAVVADEVRNLASRTQNSTEEIQALIGRLQAESRRSVESMRVNVTEATQTSEKAN 568

Query: 592 HANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQ 651
            A +A+  I   ++ I  M+  I+ AA EQ     +I  S+E+I+ ++  +     Q+  
Sbjct: 569 KAIAALGAIADSVMAIRDMNHQIAVAAEEQATVVGTINVSVEEISGLARMNAAGSEQVQN 628

Query: 652 TSANLTALANQQSELVHRFKL 672
           ++  ++ ++++ S +V RFKL
Sbjct: 629 SANGISEISSKLSGIVGRFKL 649