Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  207 bits (527), Expect = 1e-57
 Identities = 176/638 (27%), Positives = 315/638 (49%), Gaps = 57/638 (8%)

Query: 45  SNFESVSTAALPLVSLSNQTSVQLLSADKSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSV 104
           +  + +S AA  ++ L       +LS  +  KDF    D + +D  + +  +  ++  S+
Sbjct: 30  AKLDDLSHAAQQVIELEKD----VLSLRRDEKDFFARLDLAYLDKHKTQARELDEKMVSL 85

Query: 105 LAELSQASVNHPELAQPITELKQLETRYFSEADLAMDN--------YQAMFAAQASVQKS 156
            A   +  ++  +L      L + E+ +   A+L            Y A+ +A  +V+  
Sbjct: 86  GAIFDRHDISQSDLQAFRQNLTRYESIFAEIAELQKQIGLHPKDGLYGALRSAVHNVETL 145

Query: 157 TREFQRLHSELSVGMKEFVDDNDSISVKVMAKSYFIKLKDAEVITSDALASSDVAFVEKA 216
            +E  +   EL V M +   +     ++  A SY  K K             ++A + + 
Sbjct: 146 VKE--KNEPELMVTMLQLRRNEKDFMLR-RAMSYLDKFK------------GNLALLRQQ 190

Query: 217 VNQNKKAVTHLNYAYRG-LTTQMPQLKERFDEPVAKFTQDIGQKGGVLDQHNEYLQARAA 275
           V+        L+ + +G L   +   ++ F   V+K  Q++G     LD+ +  +   A+
Sbjct: 191 VSG-----AMLSDSVKGELNALIDDYEKNFKALVSK-EQELG-----LDKDSGSM---AS 236

Query: 276 LYNNIANLANEVDKAMTILGAFNQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLAT 335
           L ++I++     +K++  L A +  A  D     AE+ +V       ++V+ I + L+  
Sbjct: 237 LRDSISS----AEKSLVQLKAQSMDAISD-----AESATV-----TISIVVFILITLVLI 282

Query: 336 AIGYHIAHSVREPVTRILKTLESL-TQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDIL 394
                I  S+ EPV RI   +  +    ++T R + + ++E  +++RH NS+ ++   ++
Sbjct: 283 GFTLAIIRSIMEPVQRISDAISRIEATKDLTLRCDTKVDDEIGQIARHFNSMVESFQSLI 342

Query: 395 VKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSL 454
            ++ ++ + +  +       S+ A   +  Q  +T  VA A+TEM  ++ E+A++ + + 
Sbjct: 343 REVLTSVEVVNHSCQELSENSMRASEGVGRQLNETDMVATAITEMGATIDEIASNTELAA 402

Query: 455 AMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAE 514
                    ++ G+  +   I  I+ L  +L +S + V +L K S  IGS+LDVIR IAE
Sbjct: 403 ERAGNTHDNAQQGQVGVEHTIEKIQALAAQLTDSAQVVSELEKDSETIGSVLDVIRGIAE 462

Query: 515 QTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASK 574
           QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT +ST EI  +I  LQS +    +
Sbjct: 463 QTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEIAGIIQTLQSRTRSIVQ 522

Query: 575 VIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIED 634
           ++E+  +    S +QA+ A + +E+I A +  I  MST I+ A  EQ+   + + +++  
Sbjct: 523 LMEATQRQGIESADQAASAGALLEQINADVTNIMDMSTQIAAAIEEQSMVASEVNKNVVV 582

Query: 635 INHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
           I  I+ ES QA  + A+ S ++ A      + V  FK+
Sbjct: 583 IRDIAAESAQAADENAKASDDVKARTQVLYQAVSLFKI 620