Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  212 bits (539), Expect = 4e-59
 Identities = 138/404 (34%), Positives = 226/404 (55%), Gaps = 11/404 (2%)

Query: 279 NIAN-LANEVDKAMTILGAFNQTATDDLNQSLAEAGS-------VYQQGAIKAVVIGIAV 330
           NIA  L  E+     ++   + T  + ++  L  AG        +Y+      ++I +  
Sbjct: 139 NIAGQLREEIIPLYRVIDPISGTIAELISLQLKVAGEEKDRVAEIYESSISLFILITLVA 198

Query: 331 VLLATAIGYHIAHSVREPVTRILKTLESLTQ-GNMTQRIEIRYNNEFSRLSRHINSLADN 389
            + +  +G  I  SV +P+  I   L ++ Q  ++T   E    +E   +S  +N +  +
Sbjct: 199 AIASIVLGVWINRSVMKPINHIRTQLHTIQQDSDLTVTFEQLNKDELGLISTGLNDVFRH 258

Query: 390 LHDILVKLNSASDDLTATA-STNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVAN 448
           L  IL  +  A++ ++ +A + N+ T +S   ++  Q+ +T   A AM EM  +V EVA 
Sbjct: 259 LRGILKGVAEAANSVSDSALALNEFTQIS-NARIQQQQAETEQTATAMNEMTATVNEVAQ 317

Query: 449 SAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDV 508
           S   +    +  +  + +G  I+  +IS+++ L  ++  + E +  L   S  IGS+L V
Sbjct: 318 STTAAADSARNADRFAANGNDIVQLSISSMQALSMQIQSTSEVITHLSHESQHIGSVLSV 377

Query: 509 IRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSS 568
           I+ IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LAQRT ++T EIE+MI  LQS 
Sbjct: 378 IKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQEATQEIETMIETLQSG 437

Query: 569 SSLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSI 628
            + A   ++  ++ ++ + +Q + A  A++EI A +  I+ M+THI+ AA EQ+    SI
Sbjct: 438 VNEAVTAMDVGIKQVDDANQQTNKAGEALQEIVASVDNITEMNTHIATAAEEQSSVAESI 497

Query: 629 ARSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
            RSI  I+ I+ +S ++  ++  + A LT+LA+   + V  F+L
Sbjct: 498 NRSIIAISDIASQSTESALELGHSIAQLTSLADSMRQQVTTFRL 541