Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  211 bits (537), Expect = 8e-59
 Identities = 124/376 (32%), Positives = 218/376 (57%), Gaps = 9/376 (2%)

Query: 305 LNQSLAEAGSVYQQGA--------IKAVVIGIAVVLLATAIGYHIAHSVREPVTRILKTL 356
           L+  +AEA + YQ           + A+  G+A++ ++ +  + I   V   V ++ +T 
Sbjct: 198 LDMQIAEAKTSYQASQETVSLYIWLVAIFSGVAMLAISVSSVF-IIRRVSLSVVQLEETA 256

Query: 357 ESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQTTSL 416
             +  G++T+RI +  ++EF+ ++ H+N +A +    +   ++++  L + A  N   S 
Sbjct: 257 VDIAAGDLTKRIRLGGHDEFAHIAEHVNRIASDFQQAVTNTHASTSRLASAAEENAVVST 316

Query: 417 SAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNIS 476
             Q  +  Q++QT  +A A+ E   +V+EVA SA ++    Q    A+   + ++  +I+
Sbjct: 317 QTQRNVLDQQQQTQLIATAIHEFTATVREVAQSAASAATASQDANGAAHGAQGVVDESIA 376

Query: 477 TIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRG 536
            I  L   L  + EA+  L + S++IG+++DVI+ I+EQTNLLALNAAIEAARAGEQGRG
Sbjct: 377 VIEALAQELSRASEAMTLLAQHSNEIGTVVDVIQAISEQTNLLALNAAIEAARAGEQGRG 436

Query: 537 FAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHANSA 596
           FAVVADEVR LA+RT  ST EI+ MI  LQ  +  + ++++S  + ++LSV+++     A
Sbjct: 437 FAVVADEVRSLAKRTQDSTEEIQKMIQRLQQGARDSMQMMQSGTEQVKLSVDKSLMVRDA 496

Query: 597 MEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANL 656
           +++I   I EI+ ++  I+ A+ EQ+  T  I  +I +I+ ISD++ +   Q +  + +L
Sbjct: 497 LQQILNSIEEINALNAQIATASEEQSSVTEEININITNISEISDQTAEGARQSSDATEDL 556

Query: 657 TALANQQSELVHRFKL 672
             LA      +  +K+
Sbjct: 557 ARLAESMEADIAHYKV 572