Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  239 bits (609), Expect = 4e-67
 Identities = 183/683 (26%), Positives = 326/683 (47%), Gaps = 29/683 (4%)

Query: 10  MQGSVIRRMYAGFALIIIMFVVTVAIMLRGMNQIHSNFESVSTAALPLVSLSNQTSVQLL 69
           M+ +V  R+  GF+++ ++ +V     L   + I S+   +   +LP +  SN  +  L 
Sbjct: 1   MKLNVATRVIGGFSVVTLLLIVLGVASLVTNDNIKSSTLVLQDLSLPALKSSNGLTQNLA 60

Query: 70  SADKSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITELKQLE 129
             +K       ++ +  +  +R +F    + F + L +L++    H +      ++K L 
Sbjct: 61  LQEKQLLVAFHSKQSKELPQVRSQFTSLSKGFITELDQLNRIIQGHEDNLGG--QIKSLR 118

Query: 130 TRYFSEADLAMDNYQAM---FAAQASVQKSTREFQRLHSELSVGMKEFVD---DNDSISV 183
             Y S  D ++   QA       Q S+  +    +    + +  + + +D     D    
Sbjct: 119 ANYQSFNDNSLKMMQAREQSLQTQESLVDNLESLEGAADDTASLLLDLIDLETSQDPTER 178

Query: 184 KVMAKSYFIKLKDAEVITS-----DALASSDVAFVEKA----VNQNKKAVTHLNYAYRGL 234
           ++ A +  I    + +ITS     +A   S    + K     +++ +  + +++  + G+
Sbjct: 179 EIAATASNIDNSFSNLITSSYDLVNAKEKSKYETILKELDYIISEAQNKLEYVSRHWEGV 238

Query: 235 TTQMPQLKERFDEPVAKFTQDIGQKGGVLDQHNEYLQAR---AALYNNIANLANEVDKAM 291
             Q  +  +  +   +K    +     +L +  + L      + L N + + A  V+++M
Sbjct: 239 IDQ--EALDNINTEASKVFTMLNGPDSILKRKGQQLDFNLQASQLLNTVESNATAVNQSM 296

Query: 292 TILGAFNQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTR 351
              G+ N+           +A       + K + + +  +++A  +   +   ++  + +
Sbjct: 297 ---GSLNKAIESTSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLDK 353

Query: 352 ILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTN 411
           +   L  L  GN+T +++   ++EF+ LSR+ N L D+L  ++  +   S+ L A A   
Sbjct: 354 VNNALNILASGNLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAE-- 411

Query: 412 QTTSLSAQNK--LNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQ 469
           +T++++AQ    +  Q+ Q   VA A T+++ S  +V+ SA  +L  ++Q +  ++  R 
Sbjct: 412 ETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRA 471

Query: 470 IMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAAR 529
           I   N  TI  L   + ++ + +  +   S+ IGSILDVIR IAEQTNLLALNAAIEAAR
Sbjct: 472 IADENKRTILALADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAAR 531

Query: 530 AGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQ 589
           AGEQGRGFAVVADEVR LA RT  ST EI+ MI  LQ  +  A  V+E   Q     VE+
Sbjct: 532 AGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEK 591

Query: 590 ASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQI 649
              AN A+E I   +       THI+ AA EQN  +  ++  +E I  IS+E+     Q 
Sbjct: 592 TEQANVALESISNAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQT 651

Query: 650 AQTSANLTALANQQSELVHRFKL 672
           AQ+S  +  LA +    V  FK+
Sbjct: 652 AQSSHQVAQLAEELQASVGEFKV 674