Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis protein (NCBI) from Shewanella oneidensis MR-1

 Score =  231 bits (588), Expect = 9e-65
 Identities = 158/511 (30%), Positives = 268/511 (52%), Gaps = 8/511 (1%)

Query: 164 HSELSVGMKEFVDDNDSISVKVMAKSYFIKLKDAEVITSDALASSDVAFVEKAVNQNKKA 223
           HS   +   + V  ND   +K++A  Y + + DA V  ++A   S         + +K  
Sbjct: 37  HSVERIYENQVVPLND---LKIIADKYAVDVNDA-VNKANAGGFSASQAANALEDASKTI 92

Query: 224 VTHLN-YAYRGLTTQMPQLKERFDEPVAKFTQDIGQKGGVLDQHNEYLQARAALYNNIAN 282
             H   Y    LT +  QL ++         Q I Q    L   N  +  +  L + I  
Sbjct: 93  KLHWQKYLATELTKEESQLTQQAAPLFTAANQQIEQLVSYLRSFNGDVAHQ--LNDKILP 150

Query: 283 LANEVDKAMTILGAFNQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIA 342
           L   +D   + +           ++ +A    +Y       + +    +LL+  IG  + 
Sbjct: 151 LYQVIDPISSTISELTALQIKIADKEIAVDKELYDSSITIFITLAGLAILLSILIGLWVK 210

Query: 343 HSVREPVTRILKTLESLTQ-GNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSAS 401
            SV  P+  I++ L+++ Q  ++T +     ++E   +S  +  + ++L  IL  +  A+
Sbjct: 211 RSVMNPINDIVRNLKTIRQDSDLTVKFHTFNDDELGLISTSLTQVIEHLRGILHSIAEAA 270

Query: 402 DDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVE 461
           + +T++A+   + +     ++  Q+ +T   A AM EM  +V EVA S   +    +  +
Sbjct: 271 NTVTSSATELSSFTQETNKRMQQQQAETEQTATAMNEMTATVAEVAQSTSAAANSAKDAD 330

Query: 462 TASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLAL 521
           T + +G +I+  +IS++ QL  ++ ++ + +G L   S  IG +LDVI++IAEQTNLLAL
Sbjct: 331 TYAANGNRIVIDSISSMSQLSEQIQKTAQVIGFLSNESQNIGRVLDVIKSIAEQTNLLAL 390

Query: 522 NAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQ 581
           NAAIEAARAGEQGRGFAVVADEVR LAQRT +ST EIE+MI+ LQ     A   +E  ++
Sbjct: 391 NAAIEAARAGEQGRGFAVVADEVRTLAQRTQKSTQEIEAMIATLQQGVKQAVSAMEVGIK 450

Query: 582 DMELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDE 641
            ++ +  +A+ A  A++EI A +  I+ ++THI+ AA EQ+    +I RSI  I+ I+D+
Sbjct: 451 QVDDANNKANQAGQALKEIVASVDNIAELNTHIATAAEEQSSVAENINRSIIAISDITDD 510

Query: 642 SYQAMSQIAQTSANLTALANQQSELVHRFKL 672
           + ++  +++++  NLT LAN     V  F+L
Sbjct: 511 ATRSALELSESVINLTKLANSMRSQVSAFRL 541