Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  203 bits (517), Expect = 1e-56
 Identities = 112/368 (30%), Positives = 210/368 (57%), Gaps = 2/368 (0%)

Query: 307 QSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTRILKTLESLTQGNMTQ 366
           + + ++ + Y+   + ++++G + +     + + +   ++ P+  +LK    ++ GN+T 
Sbjct: 179 EMVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNLTN 238

Query: 367 RIEIRY--NNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNS 424
           ++ +     +EF +L+   N + DNLH ++ +++++   L++ A    + +L + N + +
Sbjct: 239 KLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMET 298

Query: 425 QREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETR 484
           Q+ + + +A AM EM  +VQ+VA +  ++     Q    +  G + ++ +I  I ++   
Sbjct: 299 QQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGA 358

Query: 485 LIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 544
           +  +   +  L   S  IG +L+VI+ IAEQTNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 359 IEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 418

Query: 545 RVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHANSAMEEIQALI 604
           R LA+RT  STS I S+IS LQ  ++ A + ++   + M  +V +A  A  ++ +I + +
Sbjct: 419 RTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSV 478

Query: 605 IEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLTALANQQS 664
             IS M+  I+ A  EQ   +  + R++ +I+  S++      Q+A    +L+ LA Q  
Sbjct: 479 SCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQ 538

Query: 665 ELVHRFKL 672
           ++V +F +
Sbjct: 539 DMVKKFHI 546



 Score = 46.6 bits (109), Expect = 3e-09
 Identities = 84/544 (15%), Positives = 220/544 (40%), Gaps = 55/544 (10%)

Query: 14  VIRRMYAGFALIIIMFVVTVAIM------LRGMNQIHSNFESVSTAALPLVSLSNQTSVQ 67
           + + M     LI + F++++ ++      +  +  +HSN   ++   +P +  S Q  + 
Sbjct: 1   MFKNMTLAQRLISVFFILSLLVLGVAWFSVVQLAGLHSNTTKITENLIPSIRSSAQMHIA 60

Query: 68  LLSADKSFKDFLT---TQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITE 124
           LL A ++  + +    T D++ ++  +Q F  +K  F++   + ++ +    +  Q   +
Sbjct: 61  LLDARRNELNMVIDVMTHDSAAIEISKQRFETAKSEFEAGAQQYAKLNFVSEQDEQLFIK 120

Query: 125 LKQLETRYFS--EADLAMDNYQAMFAAQASVQKSTREFQRLHSELSVGMKEFVDDNDSIS 182
           L +   +YFS   + ++  +   M +A   ++  TR+   +  E ++ ++   +D  +  
Sbjct: 121 LGEAAEKYFSAHSSLVSAIDQGDMASANIMIKTLTRQTLEVAGEETMNLRH-ENDRAAQE 179

Query: 183 VKVMAKSYFIKLKDAEVITSDALASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQLK 242
           + + +++ +   K   +I   +     V      + Q +  +  L             LK
Sbjct: 180 MVLQSENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWL-------------LK 226

Query: 243 ERFDEPVAKFTQDIGQKGGVLDQHNEYLQARAALYNNIANLANEVDKAMTILGAFNQTAT 302
           +  +      T  +       D+  +  ++   + +N+  L +EV  ++  L     +A 
Sbjct: 227 QTHEVSAGNLTNKLNMNAFARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQL----SSAA 282

Query: 303 DDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTRILKTLESLTQG 362
           ++++     + +  +    +   +  A+  +   +   +A +  +      +  ++ TQG
Sbjct: 283 EEISSVALHSSNNMETQQNELNQLATAMHEMQATV-QDVARNTNDAANAATQASDTATQG 341

Query: 363 NMTQRIEI----RYNNEFSRLSRHINSLADNLHDI---------------LVKLNSASDD 403
           + T    I    +        +  I  L D+  +I               L+ LN+A + 
Sbjct: 342 SETVNDSIVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEA 401

Query: 404 LTATASTNQTTSLSAQNKLNSQREQ--TSSVAAAMTEMAHSVQEVANSAQNSL-AMVQQV 460
             A         ++ + +  ++R Q  TS + + ++E+     E   + Q S   M++ V
Sbjct: 402 ARAGEQGRGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETV 461

Query: 461 ETASESGRQI--MSTNISTIRQLETRLIESVEAVGDL-RKMSSQIGSILDVIRNIAEQTN 517
             A E+G  I  +S+++S I Q+  ++  + E  G +  +++  + +I     ++A    
Sbjct: 462 CKAREAGESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAK 521

Query: 518 LLAL 521
            +A+
Sbjct: 522 QMAM 525