Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  204 bits (518), Expect = 1e-56
 Identities = 129/347 (37%), Positives = 197/347 (56%), Gaps = 3/347 (0%)

Query: 329 AVVLLATAIGYH-IAHSVREPVTRILKTLESLTQGN--MTQRIEIRYNNEFSRLSRHINS 385
           AVVLL + +    + + +  P+ R+ + L  +  GN  +TQRIE+   +E   L+   N 
Sbjct: 277 AVVLLLSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNR 336

Query: 386 LADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQE 445
              + H ++  +   + +L A A  +  T+  A  +L  Q+++ + VA A+TEMA +  E
Sbjct: 337 FVGSQHQLISHIRHLAGELDADAEHSLKTNHLAVAELQRQQQEVAMVATAVTEMASATNE 396

Query: 446 VANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSI 505
           +A +A+N+    QQ   +S  G+++++   S+I  L   + ++ E + DL + +  I SI
Sbjct: 397 IAANAENTATAAQQSAASSFQGKELVNKTRSSINSLADEVTQATEVIEDLSRHAQSISSI 456

Query: 506 LDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNL 565
           L  I+ IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVL++RT  ST E+ + I  L
Sbjct: 457 LATIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETL 516

Query: 566 QSSSSLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETT 625
           Q +++ A  ++ES       SVE A+ A  A+EEI   +  IS M+  I+ AA EQ + T
Sbjct: 517 QRTTAKAVSLMESSQMLAGNSVEDANAAVKALEEITQAVNVISDMAGQIATAAEEQTQVT 576

Query: 626 TSIARSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
             I ++   I  ++DE  +A       +  L A AN  +  V  F L
Sbjct: 577 GEITQNTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATFIL 623