Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  236 bits (601), Expect = 3e-66
 Identities = 174/690 (25%), Positives = 334/690 (48%), Gaps = 44/690 (6%)

Query: 10  MQGSVIRRMYAGFALIIIMFVVTVAIMLRGMNQIHSNFESVSTAA------LPLVSLSNQ 63
           M+ +V  R+  GF+      VVT+ ++L G     +N     ++A      LP +  +N 
Sbjct: 1   MKVNVATRVIGGFS------VVTLLLVLLGFTSYLTNISLKDSSAMMQQLSLPALKSTNH 54

Query: 64  TSVQLLSADKSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPIT 123
            +  L    +          + L+  +R+ F     +F++ +  L+        L+  I+
Sbjct: 55  LTESLSEQQRQVLIAYHAPKSRLIPDIRKVFNDHSAQFKNEINNLTLLVQKQNNLSSLIS 114

Query: 124 ELKQLETRYFSEADLAMDNYQAMFAAQASVQKSTREFQRLHSELSVGMKEFVD-----DN 178
           +L    + +  ++   +   +A  + Q  +    ++ +    + S  + + +D     + 
Sbjct: 115 QLSNSFSTFERDSLAMLSEREAALSKQEQLISLKKKLENAADDASSVLLDIIDLENSQNP 174

Query: 179 DSISVKVMAKSYFIKLKD-----AEVITSDALASSDVAFVEK--AVNQNKKAVTHLNYAY 231
           D+ S+   A +    + +     A+++++D ++  ++   E    +++ K  + ++N   
Sbjct: 175 DAQSIAASASAIDTGMGNIITTIADLVSNDEMSKHELISKELDYILSETKNKLEYVNRHA 234

Query: 232 RGLTTQMPQLKERFDEPVAKFTQDIGQKGGVLDQHNEYLQARAALYNNIANLANE---VD 288
            G+            + +    QD+ +   +L+  +  +Q +A   N+    +N+   ++
Sbjct: 235 EGIVDA---------DTLESINQDVKKVLTLLEGSDSMVQQKANQLNHAQAASNQLAIIE 285

Query: 289 KAMTILGAFNQTATDDLNQSLAEAGSV----YQQGAIKAVVIGIAVVLLATAIGYHIAHS 344
           K + ++    +  +D++    A+            + + +++ +  +++A  I + +   
Sbjct: 286 KDVKVIDRNMEEVSDNIEAVAAQMSQATITQIDAASFRTMIVVLIAIVVAIIISFAVVTP 345

Query: 345 VREPVTRILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDL 404
           ++  + ++   L  L  GN+T +++    +EF+ L+++ N L D+L  ++  +   S+ L
Sbjct: 346 LKRSLNQVNNALNVLASGNLTHKLDDSSQDEFAELAKNCNRLVDSLRGLIAGILDRSNQL 405

Query: 405 TATASTNQTTSLSAQNK--LNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVET 462
            A A   QT++++AQ    +  Q+ Q   VA A TE++ S Q+V+ SA ++LA ++Q + 
Sbjct: 406 AAAAE--QTSAITAQTTTGIQEQKSQVDQVATATTELSSSAQQVSMSANDALAQIKQADQ 463

Query: 463 ASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALN 522
            ++  R I   N  TI  L   + ++ + +  +   S+ IGSILDVIR IAEQTNLLALN
Sbjct: 464 EAKHMRAIAEENKHTILALAEEVAKAGQVINKVHSDSAAIGSILDVIRGIAEQTNLLALN 523

Query: 523 AAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQD 582
           AAIEAARAGEQGRGFAVVADEVR LA RT  ST EI+ MI  LQ  +  A   ++     
Sbjct: 524 AAIEAARAGEQGRGFAVVADEVRSLASRTQVSTREIQQMIEVLQQGAQQAVAAMDMGRAQ 583

Query: 583 MELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDES 642
               V++   AN A+E I   + +     THI+ AA EQN  +  ++  +E I  IS+E+
Sbjct: 584 ANACVQKTEQANLALETISQSVHKAYDAGTHIAHAAQEQNLVSQQVSEKLEHIAAISEET 643

Query: 643 YQAMSQIAQTSANLTALANQQSELVHRFKL 672
                Q AQ+S  +  LA +    V  F++
Sbjct: 644 AIGADQTAQSSHQVAKLAEELQASVGEFRV 673