Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  192 bits (488), Expect = 4e-53
 Identities = 122/351 (34%), Positives = 196/351 (55%), Gaps = 5/351 (1%)

Query: 326 IGIAVVLLATAIGYHIAHSVREPVTRILKTLESLTQGNMTQRIEIRYNN---EFSRLSRH 382
           +G+ ++++   +   I     + + R+   L  + +G+    + I   N   E   L+  
Sbjct: 281 VGVGLLVIFGLVLVAIFKMQFKDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASG 340

Query: 383 INSLADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHS 442
            N   + LH ++ ++++ +  L   A  +  ++     ++  Q+++ + VA A+TEMA +
Sbjct: 341 FNRFVERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASA 400

Query: 443 VQEVANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQI 502
            +E+A++A+++    Q   + S  G++ +  +  +IR L   +  +   + +L + S +I
Sbjct: 401 TEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKI 460

Query: 503 GSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMI 562
            SIL  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVL+QRT  ST EI++MI
Sbjct: 461 NSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMI 520

Query: 563 SNLQSSSSLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQN 622
             LQ ++  A K +       E SV  A+ A+ ++ +I   I EIS M++ I+ AA EQ 
Sbjct: 521 ETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQT 580

Query: 623 ETTTSIARSIEDINHISDE-SYQAMSQIAQTSANLTALANQQSELVHRFKL 672
             T+ I R+ E I  +S+  S +A S + Q S  L  LA    + V RFKL
Sbjct: 581 SVTSEINRNTESIREVSENLSIEAQSAMVQ-SQELAHLAASLQQEVSRFKL 630



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 56/260 (21%), Positives = 102/260 (39%), Gaps = 24/260 (9%)

Query: 26  IIMFVVTVAIMLRGMNQIHSNFESVSTAALPLVSLSNQTSVQLLSADKSFKDFLTTQDTS 85
           + M    V  M     +I SN E  +  A   VSLSN    Q++ + +S ++     DT+
Sbjct: 387 VTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTA 446

Query: 86  LMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPITELKQLETRYFSEADLAMDNYQA 145
               +  E  +  Q+  S+L  +S  +          T L  L      EA  A +  + 
Sbjct: 447 --GRIISELNEHSQKINSILLTISGIAEQ--------TNLLALNAAI--EAARAGEQGRG 494

Query: 146 MFAAQASVQKSTREFQRLHSELS--VGMKEFVDDNDSISVKVMAKSYFIKLKDAEVITSD 203
                  V+  +   QR HS       M E +      +VK M +S+ +    AE   +D
Sbjct: 495 FAVVADEVRVLS---QRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDM----AETSVAD 547

Query: 204 A-LASSDVAFVEKAVNQNKKAVTHLNYAYRGLTTQMPQLKERFDEPVAKFTQDIG-QKGG 261
           A  AS  +  + KA+N+     + +  A    T+   ++  R  E + + ++++  +   
Sbjct: 548 ANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEI-NRNTESIREVSENLSIEAQS 606

Query: 262 VLDQHNEYLQARAALYNNIA 281
            + Q  E     A+L   ++
Sbjct: 607 AMVQSQELAHLAASLQQEVS 626