Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  233 bits (593), Expect = 3e-65
 Identities = 180/686 (26%), Positives = 339/686 (49%), Gaps = 36/686 (5%)

Query: 10  MQGSVIRRMYAGFALIIIMFVVTVAIMLRGMNQIHSNFESVSTAA------LPLVSLSNQ 63
           M+ +V  R+  GF+      VVT+ ++L G     +N     ++A      LP +  +N 
Sbjct: 1   MKVNVATRVIGGFS------VVTLLLVLLGFTSYLTNISLKDSSAMMQELSLPALKATNH 54

Query: 64  TSVQLLSADKSFKDFLTTQDTSLMDGMRQEFAQSKQRFQSVLAELSQASVNHPELAQPIT 123
            +  L    +          +S +  +R+ F     +F++ ++ L+Q       L+  I+
Sbjct: 55  LTETLSEQQRQVLIAYHAPKSSNIPDIRKVFNDHGTQFKNEISNLTQLVQGQANLSALIS 114

Query: 124 ELKQLETRYFSEADLAMDNYQAMFAAQASVQKSTREFQRLHSELSVGMKEFVD-----DN 178
           +L    + +  ++   +   +A  + Q  +    ++ +    + S  + + +D     + 
Sbjct: 115 QLDGSFSTFERDSLAMLTEREAALSKQEQLIGLKKKLENAADDASSVLLDIIDLENSQNP 174

Query: 179 DSISVKVMAKSYFIKLKD-----AEVITSDALASSDVAFVEK--AVNQNKKAVTHLNYAY 231
           D+ S+   A +    + +     A+++T++ ++  ++   E    +++ K  + ++N   
Sbjct: 175 DAQSIAASASAIDTSMGNIITTIADLVTNEEMSKHELISKELDYILSETKNKLEYVNRHA 234

Query: 232 RGLTTQMPQLKERFDEPVAKFTQDIGQKGGVLDQHNEYLQARAALYNNIANLANEV---D 288
           + +      LK   ++         G    VL +  +   A++A+ N +A +  +V   D
Sbjct: 235 QDII-DADTLKSVNEDTKKVLALLEGPDSMVLLKATQLNHAKSAM-NQLATIEKDVKVID 292

Query: 289 KAMTILGAFNQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREP 348
           + M  +    ++   +++Q   E  +     +I+ +++ +  ++ A  I + +   ++  
Sbjct: 293 RNMEDVSNNIESVAANMSQ---ETIAKIDAASIRTIIVVLIAIVAAVIISFAVVAPLKRS 349

Query: 349 VTRILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATA 408
           + ++   L  L  GN+T +++   ++EF+ L+++ N L D+L  ++V +   S+ L A A
Sbjct: 350 LYQVNNALNVLASGNLTHKLDDSGHDEFAELAKNCNRLVDSLRGLIVGILDRSNQLAAAA 409

Query: 409 STNQTTSLSAQNK--LNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASES 466
              QT++++AQ    +  Q+ Q   VA A TE++ S Q+V+ SA ++LA ++Q +  ++ 
Sbjct: 410 E--QTSAITAQTTSGIQEQKSQVDQVATATTELSSSAQQVSMSADDALAQIKQADQEAKH 467

Query: 467 GRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIE 526
            R I   N  TI  L   + ++ + +  ++  S+ IGSILDVIR IAEQTNLLALNAAIE
Sbjct: 468 MRTIAEENKRTILALADEVAKAGQVINKVQSDSASIGSILDVIRGIAEQTNLLALNAAIE 527

Query: 527 AARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELS 586
           AARAGEQGRGFAVVADEVR LA RT  ST EI+ MI  LQ  +  A   ++         
Sbjct: 528 AARAGEQGRGFAVVADEVRSLASRTQVSTREIQQMIEVLQQGAQQAVAAMDMGRAQANAC 587

Query: 587 VEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAM 646
           V++   AN A+E I   + +     THI+ AA EQN  +  ++  +E I  IS+E+    
Sbjct: 588 VDKTEQANLALETISQSVHKAYDAGTHIAHAAQEQNVVSQQVSEKLEHIAAISEETAIGA 647

Query: 647 SQIAQTSANLTALANQQSELVHRFKL 672
            Q AQ+S  +  LA +    V  F++
Sbjct: 648 DQTAQSSHQVAKLAEELQASVGEFRV 673