Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  233 bits (595), Expect = 1e-65
 Identities = 156/499 (31%), Positives = 272/499 (54%), Gaps = 19/499 (3%)

Query: 183 VKVMAKSYFIKLKDA--EVITSDALASSDVAFVEKAVNQ-NKKAVTHLNYAYRGLTTQMP 239
           +KV+A  Y + + DA  +       AS  +  +E A +  N++   +L+       +Q+ 
Sbjct: 53  LKVIADKYAVDVIDAVNKANAGGFTASQAINALESAKSTVNQRWQKYLSTELTKEESQLA 112

Query: 240 QLKERFDEPVAKFTQDI-----GQKGGVLDQHNEYLQARAALYNNIANLANEVDKAMTIL 294
           Q  ER   P  +  + +     G  G V+ Q N+ +     LYN I  ++ +V + + + 
Sbjct: 113 QQAERLFTPANEQIEQLITYLRGLNGDVVHQLNDKI---LPLYNAIDPISGKVSELIDLQ 169

Query: 295 GAFNQTATDDLNQSLAEAGSVYQQGAIKAVVIGIAVVLLATAIGYHIAHSVREPVTRILK 354
                   D +N        +YQ      + +    +L++  IG  +  SV  P+  I++
Sbjct: 170 IKIAGQEKDAVN-------GIYQSSISIFITLAGIAMLISIVIGLWVNRSVMNPIRDIVE 222

Query: 355 TLESLTQ-GNMTQRIEIRYNNEFSRLSRHINSLADNLHDILVKLNSASDDLTATASTNQT 413
            L+++ Q  ++T + +   ++E  ++S  +  + ++L  IL  +  A++ + ++A+   +
Sbjct: 223 NLKTIRQDSDLTVKFKTFNDDELGQISTSLTQVIEHLRGILHSIAEAANTVNSSATELSS 282

Query: 414 TSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETASESGRQIMST 473
            + +   ++  Q+ +T   A AM EM  +V EVA SA  +    +  ++ + +G  I+  
Sbjct: 283 FTQATNKRMQQQQAETEQTATAMNEMTATVAEVAQSAAAAADSAKDADSYAANGNHIVMQ 342

Query: 474 NISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQ 533
           +I+++ QL  ++ ++ + +G L   S  IG +LDVI++IAEQTNLLALNAAIEAARAGEQ
Sbjct: 343 SITSMSQLSEQIQKTAQVIGFLSNESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQ 402

Query: 534 GRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDMELSVEQASHA 593
           GRGFAVVADEVR LAQRT +ST EIE+MI+ LQ     A   +E  +  ++ + ++A+ A
Sbjct: 403 GRGFAVVADEVRTLAQRTQKSTQEIEAMIATLQQGVKEAVNAMEVGINQVDDANDKANQA 462

Query: 594 NSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESYQAMSQIAQTS 653
             A++EI A +  I+ ++THI+ AA EQ+    SI RSI  I+ I++ S  +  +++++ 
Sbjct: 463 GQALKEIVASVDNITELNTHIATAAEEQSSVAESINRSIIAISDIAEHSTNSALELSESV 522

Query: 654 ANLTALANQQSELVHRFKL 672
            NLT LAN     V  F+L
Sbjct: 523 LNLTKLANSMRNQVSAFRL 541



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 154 QKSTREFQRLHSELSVGMKEFV-----------DDNDSISVKVMAKSYFIKLKD--AEVI 200
           QKST+E + + + L  G+KE V           D ND  +    A    +   D   E+ 
Sbjct: 421 QKSTQEIEAMIATLQQGVKEAVNAMEVGINQVDDANDKANQAGQALKEIVASVDNITELN 480

Query: 201 TSDALASSDVAFVEKAVNQNKKAVTHL 227
           T  A A+ + + V +++N++  A++ +
Sbjct: 481 THIATAAEEQSSVAESINRSIIAISDI 507