Pairwise Alignments

Query, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  194 bits (492), Expect = 1e-53
 Identities = 123/354 (34%), Positives = 192/354 (54%), Gaps = 6/354 (1%)

Query: 323 AVVIGIAVVLLATAIGYH----IAHSVREPVTRILKTLESLTQGNMTQRIEIRYNNEFSR 378
           +V I   V ++A  I Y     I +++R+   RI   ++    GN+TQRI I   +E   
Sbjct: 191 SVTIATLVAIVALVIAYFGPKIIVNAIRDITDRINDIVDG--DGNLTQRIPITRQDEIGE 248

Query: 379 LSRHINSLADNLHDILVKLNSASDDLTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTE 438
           L+   N     L  +++ + S + D++ T     T S +       Q +   ++  A+ E
Sbjct: 249 LANAFNLFVAQLQQMVIAIISQTKDVSQTVENLATKSTTTIGISYEQEQFVDTIVTAVNE 308

Query: 439 MAHSVQEVANSAQNSLAMVQQVETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKM 498
           M+ +V+EVA++A ++   + +V   +  G+ I++ +++ I+QL   + ++V  +  L   
Sbjct: 309 MSAAVREVASNALHTATEITKVNDQTIEGKNILTQSVNHIQQLSESVKQAVAVIEKLSVN 368

Query: 499 SSQIGSILDVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEI 558
           S+ I S+LDVIR+IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT  ST +I
Sbjct: 369 SANIASVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTETSTQDI 428

Query: 559 ESMISNLQSSSSLASKVIESCMQDMELSVEQASHANSAMEEIQALIIEISHMSTHISQAA 618
           + MI  LQ   + A K IES       +V  AS    A++EI     ++S MST  + A 
Sbjct: 429 QRMIEELQRGVNDAVKSIESGASLTNSTVTLASQTQDALDEILNSTSKVSEMSTQTATAT 488

Query: 619 GEQNETTTSIARSIEDINHISDESYQAMSQIAQTSANLTALANQQSELVHRFKL 672
            EQ   T  I R++ +++  +      + +  Q   N   + +   + V RFK+
Sbjct: 489 EEQTHVTEEINRNLTELSDKTRYCNTVIQETQQIVVNTQTICSNLQKEVSRFKV 542