Pairwise Alignments

Query, 472 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., TPR repeat-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  192 bits (488), Expect = 2e-53
 Identities = 138/454 (30%), Positives = 230/454 (50%), Gaps = 30/454 (6%)

Query: 21  LTSLLLAGCANLTAGNLFSHYSAQ----NSDLYQSVAAGQYQQATQLLPDYVAGE--VLD 74
           L SL L+GCA     ++F  Y +Q     ++L +   A  Y+Q      D + G+  +L 
Sbjct: 23  LLSLTLSGCA---FNSVFISYPSQLAPVKAELGRQGDAALYRQ----FDDAITGQDGLLY 75

Query: 75  NLEKGRVYFLSQQYAESQQSLAAADLAVKQQQDRAIISVSSTATSVGSLAVNDNLNEYEP 134
             E GR+  ++  +  S+     A  A ++  ++A+IS S    +  SL +NDN+  Y  
Sbjct: 76  AQEAGRIAQITGNFEASKAYYRQAVDAYQKFDEQAVISASDLGATASSLFINDNVIPYRG 135

Query: 135 ADYELGFLHLYLGLNYVRNNDLDGALVEMRRANQVQEAAKKRREQALSSAEQEMRSQGLS 194
             YE   LH Y  LNY+ + D  GALVE+RR+N++Q++ + R ++  S A  +  + G  
Sbjct: 136 PGYERIMLHQYQALNYLFSRDSQGALVEVRRSNELQQSEQARYQK--SQASVQAMANGTI 193

Query: 195 PNLGSVLAQYPDAGKTLQAVQNGYLLYLSALLYEADNDLNSAYVDYRRALAVAPNNPSVI 254
               + L Q   AG T  +  N Y  Y + LL+E   + N A++DYR+A  ++P+NP + 
Sbjct: 194 DAEVNRLGQ--AAGTTTSSFLNAYSYYTTGLLHELLGEENDAFIDYRKAAQISPDNPYLQ 251

Query: 255 DGTLRVASRLGMQQDLKLLKQQYGEPKRLTSAQGRVIVIEEQGIVQPKQAWRLSLPLSDS 314
              +R+A +L M Q  +  K+++G+ K   + QG+V+++ E+G V  KQ++ +   +   
Sbjct: 252 QDLVRLAKKLAMPQ-YEEFKRRWGDAKLAKAGQGQVVILLERGFVPEKQSFTVPFRI--- 307

Query: 315 RGNTALYSLALPYYSSSVAQSRVPISLNGASLASMPVTDVDLMAKQALTEQMPALVLRQA 374
            GN    SLA  Y    V+  +  I   G  L + P+ ++D +A  AL E++P+ + RQA
Sbjct: 308 HGNWQTASLA-TYAPGRVSAPQGEIVGLGTVLQTAPLANIDALAITALKEELPSALFRQA 366

Query: 375 LRVVAKDQL-------RKETTQEEDVANLVFNIWNTLTEQPDTRSWLTLPATVNTATQVV 427
            R+ AK ++        K    E D   +   I+N +TEQ D RSWLTLP       + +
Sbjct: 367 ARIYAKAEMARSVRSESKRRNDEFDAGAIAMQIFNVVTEQADRRSWLTLPKQAQLGRRYL 426

Query: 428 KAGDQVLDIAGTH-YTFHVPENGTVLVWLSHQGN 460
            AG   + +  +      V  + T L+W+   GN
Sbjct: 427 DAGQYQIRLGQSQTQAIDVQSDKTTLIWIIETGN 460