Pairwise Alignments

Query, 472 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  189 bits (479), Expect = 2e-52
 Identities = 140/473 (29%), Positives = 229/473 (48%), Gaps = 21/473 (4%)

Query: 3   MVTNHVVQYIKRPIRSLTLTSLLLAGCANLTAGNLFSHYSAQNSDLYQSVAAGQYQQATQ 62
           M T  +  +I+  I +L L ++L  G +     ++F +Y AQ + + Q +   +      
Sbjct: 1   MKTTFIHSFIRPTISTLMLAAIL--GSSGCAYNSIFINYPAQIAPVKQELNTAKPMAEID 58

Query: 63  LLPDYVAGE--VLDNLEKGRVYFLSQQYAESQQSLAAADLAVKQQQDRAIISVSSTATSV 120
            L   + G   +L   E GRV  ++  +A S++    A  A     D+A IS S    + 
Sbjct: 59  KLASNIQGNDGLLYAQEAGRVAQVAGDFASSKKYYQQAVAAYTAFDDKAKISASDIGATA 118

Query: 121 GSLAVNDNLNEYEPADYELGFLHLYLGLNYVRNNDLDGALVEMRRANQVQEAAKKRREQA 180
            SL +NDN   Y    YE   LH Y  LNY+ + D  GALVE+RR+N++Q + ++R +++
Sbjct: 119 TSLVLNDNAIPYRGPGYERIMLHQYQALNYLFSGDYQGALVEVRRSNELQSSEQERYQKS 178

Query: 181 LSSAEQEMRSQGLSPNLGSVLAQYPDAGKTLQAVQNGYLLYLSALLYEADNDLNSAYVDY 240
             S  Q M +  +   +   L Q   AG    +  N Y  Y + +L+E   + N A++DY
Sbjct: 179 QKSV-QAMANGTIDAEVNR-LGQ--AAGTVTSSFLNAYSYYTTGVLHEVLGEPNDAFIDY 234

Query: 241 RRALAVAPNNPSVIDGTLRVASRLGMQQDLKLLKQQYGEPKRLTSAQGRVIVIEEQGIVQ 300
           R+A  + P+N  +    +R+A +LGM Q     K+++G+ K   + +G+VI++ E+G V 
Sbjct: 235 RKAAQITPDNTYLQQDLVRLAKQLGMPQ-YDEFKKRWGDAKLPKAGEGQVILMVEKGFVP 293

Query: 301 PKQAWRLSLPLSDSRGNTALYSLALPYYSSSVAQSRVPISLNGASLASMPVTDVDLMAKQ 360
            KQA  L++P +   GN    SLA  Y  ++       +   G  L + P+ ++D +A  
Sbjct: 294 EKQA--LTVPFT-IHGNWQTVSLA-TYGPNNSYVPETQVQGLGTVLKTEPIANIDALAIT 349

Query: 361 ALTEQMPALVLRQALRVVAKDQLR-------KETTQEEDVANLVFNIWNTLTEQPDTRSW 413
           AL E +P  ++RQ  RV AK ++        K      D+ ++   I+N +TEQ D RSW
Sbjct: 350 ALKEDLPGTLVRQVARVYAKSEMAYQVEKSGKPGNNAADIGSIAMQIFNVVTEQADRRSW 409

Query: 414 LTLPATVNTATQVVKAGDQVLDI-AGTHYTFHVPENGTVLVWLSHQGNNVTIW 465
           LTLP       + +  G+  L +         V    T LVW    GN   I+
Sbjct: 410 LTLPKQAQIGRRYLNPGEYTLQLDKAPPAKIEVAAGKTTLVWAIDTGNYTRIY 462