Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., ATP-dependent DNA helicase RecG (EC 3.6.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  226 bits (577), Expect = 4e-63
 Identities = 148/395 (37%), Positives = 213/395 (53%), Gaps = 19/395 (4%)

Query: 592 REQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVAT 651
           R+  A + A   F  T  Q    N +  D+ Q + M RL+ GDVG GKT VA  AA  A 
Sbjct: 255 RDLPARYLANLGFTPTGAQQRVGNEIAYDLSQPEPMLRLIQGDVGAGKTVVAALAALQAL 314

Query: 652 DNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDI 711
           + G QVA++ PT +LA+QHF  F+     L I V  L+     K +   L  +A+G   +
Sbjct: 315 EAGYQVALMAPTEILAEQHFITFQRWLEPLGIEVAWLAGKLKGKNRAAALAQIAEG-APM 373

Query: 712 LVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQK----EKVKAMRADVDILTLTATPIPRT 767
           +VGTH L   E++F +L L+I+DE+HRFGV+Q+    +K    R     L +TATPIPRT
Sbjct: 374 VVGTHALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGGRMCPHQLIMTATPIPRT 433

Query: 768 LNMAMSGMRDLSIIATPPARRLAIKT-FVRQSEDSVIREAVLREIMRGGQVYFLHNQVET 826
           L M+     D SI+   P  R  + T  V  +    + E V      G Q Y++   +E 
Sbjct: 434 LAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRSACAEGRQAYWVCTLIEE 493

Query: 827 IDKVAA--------DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIET 878
            +++          DL   + E ++ + HG+M+  E   VM +F      LLV TT+IE 
Sbjct: 494 SEELTCQAAETTFEDLTAALGELKVGLIHGRMKPAEKAAVMAEFKAGALQLLVATTVIEV 553

Query: 879 GIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAI 938
           G+DVP A+ +I++  + LGLAQLHQLRGRVGR    ++  LL  PP  +++   +RL  +
Sbjct: 554 GVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP--LSQIGRQRLGIM 611

Query: 939 ASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
               D   GF +A  DLE+RG GE+LG  Q+G +Q
Sbjct: 612 RETND---GFVIAEKDLELRGPGEMLGTRQTGLLQ 643