Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

 Score = 1268 bits (3280), Expect = 0.0
 Identities = 635/1127 (56%), Positives = 837/1127 (74%), Gaps = 2/1127 (0%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVAL-FP 73
            A  K+  GNL GA+L+LAIAE A+A    TLL   D Q+A +L  E+  F+     L FP
Sbjct: 12   AAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFP 71

Query: 74   DWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVK 133
            DWETLPYD FSPHQDIIS RI+ LY+LP L+ G+ +VP++T L R +P  FLL  +L++ 
Sbjct: 72   DWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPTQFLLGSSLVLD 131

Query: 134  RGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDT 193
             G    ++++R +LE S YR VD V+  GE+A RG+++DLFPMGS  P+RID FDDEI+T
Sbjct: 132  IGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIET 191

Query: 194  IRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKG 253
            +RTFDP+NQRSI ++  IRLLPA EFP    A+  F+ R+R+RF+       ++  +S G
Sbjct: 192  LRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSG 251

Query: 254  TWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313
              PAGIEY+ PLFFE + TLFDYLP ++Q+  +  +E+A + F  DV  RY++R +DP R
Sbjct: 252  ITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERRVDPSR 311

Query: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373
            PLLPP EL+L  ++ FA  K+ P+V  +   +E   GR     + LP LA+E +  +PLA
Sbjct: 312  PLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPARALPDLAIEAKATQPLA 371

Query: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433
            AL  F + F G+++F+ ES GRRE LLELL+R+KLRP++ + +       ++ ++ +   
Sbjct: 372  ALAGFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAGKDRLAITIAPL 431

Query: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493
              G +  D  +AL+ ES L G RV+QRRR++ R +  N DAVI+NL EL+ G PVVHIDH
Sbjct: 432  NDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAAN-DAVIKNLTELREGAPVVHIDH 490

Query: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553
            G+GRYLGL TLE     +E++ LEY   AKLYVPV++L+LI+RY+G  +  A LH+LG E
Sbjct: 491  GVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALAPLHRLGSE 550

Query: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613
             W KA+RKAAE+VRDVAAELLD+YA+R  + G+ F   +  Y TF A FPFEET DQ   
Sbjct: 551  TWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFPFEETVDQQTT 610

Query: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673
            I AV +DM   K MDRLVCGDVGFGKTEVAMRAAF+A   GKQVA+LVPTTLLAQQH+ +
Sbjct: 611  IEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYNS 670

Query: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733
            FRDRFA+ P+ VEV+SRFKS KE    + D+A+GK+DI++GTHKLL  +++F  LGL+I+
Sbjct: 671  FRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDVKFKSLGLVII 730

Query: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793
            DEEHRFGVRQKE++KA+R++VDILTLTATPIPRTLNMA+SGMRDLSIIATPPARRL+++T
Sbjct: 731  DEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRT 790

Query: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853
            FV +   S ++EA+LRE++RGGQVY+LHN V+TI+K AADL +LVPEARI + HGQMRER
Sbjct: 791  FVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRER 850

Query: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913
            ELE+VM+DFYH+RFN+L+ +TIIETGIDVP+ANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 851  ELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHH 910

Query: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
            QAYAYLLTPP + IT DA KRLEAIA+ +DLGAGF LAT+DLEIRGAGELLG+ QSGQIQ
Sbjct: 911  QAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQ 970

Query: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033
            +VGFTLYMEMLE+AV++++ G++P LD  L    E+ +R+PAL+PE+Y+PD++ RL +YK
Sbjct: 971  AVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVHARLILYK 1030

Query: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093
            +IAS + ++ L +L+VE+IDRFG LP+   NL+    LKL A +L ++K++    GG +E
Sbjct: 1031 RIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKVDGGPNGGRIE 1090

Query: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFV 1140
            F     ++P+ L+KL+Q QPK    +G T  KF +P+     R   V
Sbjct: 1091 FEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFNTV 1137