Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., ATP-dependent DNA helicase RecG from Pseudomonas fluorescens FW300-N2E3

 Score =  225 bits (574), Expect = 8e-63
 Identities = 147/391 (37%), Positives = 210/391 (53%), Gaps = 19/391 (4%)

Query: 596 ATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGK 655
           A + A   F  T  Q    N +  DM Q + M RL+ GDVG GKT VA  AA  A + G 
Sbjct: 259 AQYLANLGFPPTGAQQRVGNEIAYDMSQHEPMLRLIQGDVGAGKTVVAALAALQALEAGY 318

Query: 656 QVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGT 715
           QVA++ PT +LA+QHF  F+     L + V  L+     K +   L+ +A G   ++VGT
Sbjct: 319 QVALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKGKNRVAALEQIASG-TPMVVGT 377

Query: 716 HKLLSSEIRFADLGLLIVDEEHRFGVRQK----EKVKAMRADVDILTLTATPIPRTLNMA 771
           H L   E++F +L L+I+DE+HRFGV+Q+    +K    R     L +TATPIPRTL M+
Sbjct: 378 HALFQDEVQFKNLALVIIDEQHRFGVQQRLALRQKGVGGRMCPHQLIMTATPIPRTLAMS 437

Query: 772 MSGMRDLSIIATPPARRLAIKT-FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKV 830
                D SI+   P  R  + T  V  +    + E V      G Q Y++   +E  +++
Sbjct: 438 AYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRAACAEGRQAYWVCTLIEESEEL 497

Query: 831 AA--------DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDV 882
                     DL   + E ++ + HG+M+  E   VM  F      LLV TT+IE G+DV
Sbjct: 498 TCQAAETTYEDLTAALGELKVGLIHGRMKPAEKADVMAQFKAGALQLLVATTVIEVGVDV 557

Query: 883 PTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLE 942
           P A+ +I++  + LGLAQLHQLRGRVGR    ++  LL  PP  +++   +RL  +    
Sbjct: 558 PNASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPP--LSQIGRQRLGIMRETN 615

Query: 943 DLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
           D   GF +A  DLE+RG GE+LG  Q+G +Q
Sbjct: 616 D---GFVIAEKDLELRGPGEMLGTRQTGLLQ 643