Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., ATP-dependent DNA helicase RecG from Pseudomonas stutzeri RCH2

 Score =  220 bits (561), Expect = 3e-61
 Identities = 147/389 (37%), Positives = 204/389 (52%), Gaps = 19/389 (4%)

Query: 598 FKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQV 657
           F A   F  T  Q      +  D+ Q + M RLV GDVG GKT VA  AA  A + G QV
Sbjct: 260 FLANLGFAPTGAQQRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQALEAGYQV 319

Query: 658 AVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHK 717
           A++ PT +LA+QHF NF      L I V  L+     K +   L+ +A G   ++VGTH 
Sbjct: 320 ALMAPTEILAEQHFLNFSKWLEPLGIEVAWLAGKLKGKARAASLEQIAGG-CPMVVGTHA 378

Query: 718 LLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDI----LTLTATPIPRTLNMAMS 773
           L   E+ F  L L+I+DE+HRFGV+Q+  ++    D  +    L +TATPIPRTL M+  
Sbjct: 379 LFQDEVVFKRLALVIIDEQHRFGVQQRLALRQKGIDGRLCPHQLIMTATPIPRTLAMSAY 438

Query: 774 GMRDLSIIATPPARRLAIKTFV-RQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAA 832
              D SI+   P  R  + T V   S    + E V      G Q Y++   +E  +++  
Sbjct: 439 ADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRIACNEGRQAYWVCTLIEESEELTC 498

Query: 833 --------DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPT 884
                   DL   +   R+ + HG+M+  E   VM  F      LLV TT+IE G+DVP 
Sbjct: 499 QAAETTFEDLSAALVGLRVGLIHGRMKPVEKAAVMEQFKRGELQLLVATTVIEVGVDVPN 558

Query: 885 ANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDL 944
           A+ +I++  + LGLAQLHQLRGRVGR    ++  LL  PP      +    E +A + + 
Sbjct: 559 ASLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPL-----SQLGRERLAIMRET 613

Query: 945 GAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
             GF +A  DLE+RG GE+LG  Q+G +Q
Sbjct: 614 CDGFLIAEKDLELRGPGEMLGTRQTGLLQ 642