Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

 Score = 1110 bits (2871), Expect = 0.0
 Identities = 575/1128 (50%), Positives = 778/1128 (68%), Gaps = 18/1128 (1%)

Query: 28   SLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHS--------EVALFPDWETLP 79
            +LA +IA  A AH    L+   D Q+A    H++E   H+         V  FPDWETLP
Sbjct: 29   ALAWSIARAAEAHAGPVLVIARDNQSA----HQIEADLHALLGDASALPVVPFPDWETLP 84

Query: 80   YDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFS 139
            YD FSPH +IIS R++ L++LP LTRG+ IVPV TLLQ+ +P  +++  +  +  G    
Sbjct: 85   YDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSFDLTVGQRLD 144

Query: 140  LDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDP 199
            LD  + +LE++ YR+V QV  PG++A RG +LD+FPMG+  P RI+  D++ID+IR FDP
Sbjct: 145  LDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADTPLRIELLDEDIDSIRAFDP 204

Query: 200  DNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGI 259
            ++QRS+ ++D +++LP  E P   A++E      R+RF+      ++Y  +  G  P+G+
Sbjct: 205  ESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRERFDVDTRRSALYQDLKSGIAPSGV 264

Query: 260  EYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLRPLLPPN 319
            EY+ P+FF  + TLFDYL      L+   +  A D F      RY+QR  D  RPLLPP+
Sbjct: 265  EYYLPMFFSKTATLFDYLDTRVLPLIATGVSNAADAFWLQAQNRYEQRRHDVERPLLPPD 324

Query: 320  ELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFS 379
            EL+   D L      L ++++  +             QPLP L V  ++     AL  F 
Sbjct: 325  ELYQSPDALRERLNKLARIEVWPADHPRSDEAAPLGDQPLPPLPVAAKDAPAGQALASFL 384

Query: 380  EQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTE-KYSLVLGSAERGFI 438
              + G+++ + +S GRREAL+E+L   +L+P    D       T+ ++ + +   E GF 
Sbjct: 385  GHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVADLPAFLAATKLRFGITVAPLEDGFA 444

Query: 439  YGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGIGRY 498
                Q+A++ E  L  +R  Q RR   R+     +A+IR+L EL  G P+VH DHG+GRY
Sbjct: 445  LDTPQIAVLTERQLFPERANQPRRT--RRVGREPEAIIRDLGELSEGAPIVHEDHGVGRY 502

Query: 499  LGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWVKA 558
             GL  L+AGGM  E++ +EY    +LYVPV+ L+LISRYSG + + A LH LGGE W KA
Sbjct: 503  RGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRYSGASADTAPLHSLGGEQWTKA 562

Query: 559  RRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVL 618
            +RKAAEKVRDVAAELL++ A+R  + G    +DR  Y  F A FPFEET DQ  AI+A L
Sbjct: 563  KRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYEPFAAGFPFEETTDQLAAIDATL 622

Query: 619  SDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRF 678
             D+  ++ MDR+VCGDVGFGKTEVA+RAAF A   GKQVAVLVPTTLLA+QH+ NFRDRF
Sbjct: 623  RDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRF 682

Query: 679  ANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHR 738
            A+ P++VEVLSRFKS KE K  L+ VA G +D+++GTH+LL  +++F DLGL++VDEE R
Sbjct: 683  ADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQR 742

Query: 739  FGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQS 798
            FGVRQKE +KAMRA+V +LTLTATPIPRTLNMAM+G+RDLSIIATPP  RLA++TF+   
Sbjct: 743  FGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFITAW 802

Query: 799  EDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKV 858
            +++++REA  RE+ RGGQ+YFLHN VE+I ++  DL +LVPEARI +AHGQM ERELE+V
Sbjct: 803  DNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSELVPEARIGIAHGQMPERELERV 862

Query: 859  MNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAY 918
            M DF  QRFN+L+ TTIIE+GID+P ANTII++RAD  GLAQLHQLRGRVGRSHH+AYAY
Sbjct: 863  MLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAY 922

Query: 919  LLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFT 978
            L+ P  +++T DA KRLEAIAS+++LGAGFTLATHDLEIRGAGELLGE+QSGQ+  VGF+
Sbjct: 923  LVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFS 982

Query: 979  LYMEMLEQAVEALKSGKEPALD--DLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIA 1036
            LY E+LE+AV +++ GK P LD  + +R   EVE+ + +L+PE+Y+PD++TRL++YK+I+
Sbjct: 983  LYTELLERAVRSIRQGKLPDLDAGEEVR-GAEVELHVASLIPEDYLPDVHTRLTLYKRIS 1041

Query: 1037 SVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYP 1096
            S    D L EL+VE+IDRFG LPD   +L AIAELKL A  L VRK++  E GG + F  
Sbjct: 1042 SARDSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQANALGVRKLDLGENGGRLVFEA 1101

Query: 1097 NADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADML 1144
               I+P+ +++++Q QPK+  MDGP KL+  LPL E + R +    +L
Sbjct: 1102 KPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAADRFKAARGLL 1149