Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1150 a.a., transcription-repair coupling factor from Pseudomonas syringae pv. syringae B728a

 Score = 1284 bits (3323), Expect = 0.0
 Identities = 642/1141 (56%), Positives = 851/1141 (74%), Gaps = 1/1141 (0%)

Query: 6    LLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFS 65
            +L L     A  K+  GNL GA+L+LAIAE A+A    TLL   D Q+A +L  E++ F+
Sbjct: 3    VLRLPHLSAAAGKQHWGNLPGATLSLAIAEAASAAKRFTLLLTADSQSAERLEQELKFFA 62

Query: 66   HSEVAL-FPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDF 124
             +   L FPDWETLPYD FSPHQDIIS RI+ LY+LP L  G+ +VP++T L R +P  F
Sbjct: 63   PTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKF 122

Query: 125  LLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRI 184
            LL  +L++  G    ++ +R +LE S YR+VD V+  GE+  RG+++DLFPMGS  PFRI
Sbjct: 123  LLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPFRI 182

Query: 185  DFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPE 244
            D FDDEI+T+RTFDPD QRSI +++ +RLLPA EFP     +  F+ R+R+RF+      
Sbjct: 183  DLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFRRS 242

Query: 245  SVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRY 304
             ++  +S G  PAGIEY+ PLFFE + TLFDYLP ++Q+  +  +E+A + F  DV  RY
Sbjct: 243  PIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRY 302

Query: 305  DQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAV 364
            ++R +DP RPLLPP EL+L  ++ FA  K  P+V  +   ++  AGR     Q LP L++
Sbjct: 303  EERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGAGRERFPAQSLPDLSI 362

Query: 365  EHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTE 424
            E +  +PLAAL  F + F G+++F+ ES GRRE LLELL+R+KLRP++ + +       +
Sbjct: 363  EAKATQPLAALSTFLDDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVDGKD 422

Query: 425  KYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKP 484
            + ++ +   + G +     +ALI ES L G RV+QRRR++ R +  N+DAVI+NL EL+ 
Sbjct: 423  RLAITIAPLDEGLLLEQPALALIAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTELRE 482

Query: 485  GQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEA 544
            G PVVHIDHG+GRYLGL TLE    V+E++ML Y  +AKLYVPV++L+LI+RY+G  +E 
Sbjct: 483  GAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDDET 542

Query: 545  AQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPF 604
            A LH+LG E W KA+RKAAE+VRDVAAELLD+YA+R  + G+ F   +  YATF A FPF
Sbjct: 543  APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFPF 602

Query: 605  EETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTT 664
            EET DQ   I+AV +DM   K MDRLVCGDVGFGKTEVAMRAAF+A   G+QVA+LVPTT
Sbjct: 603  EETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTT 662

Query: 665  LLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIR 724
            LLAQQH+ +FRDRFA+ P+ VEV+SRFKSAKE    + D+A+GK+DI++GTHKLL  +++
Sbjct: 663  LLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDVK 722

Query: 725  FADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 784
              +LGL+I+DEEHRFGVRQKE++KA+R++VDILTLTATPIPRTLNMA+SGMRDLSIIATP
Sbjct: 723  IKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATP 782

Query: 785  PARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARIT 844
            PARRL+++TFV +     I+EA+LRE++RGGQVY+LHN V+TI+K AADL +LVPEARI 
Sbjct: 783  PARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIG 842

Query: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904
            + HGQMRERELE+VM+DFYH+RFN+L+ +TIIETGIDVP+ANTII++RAD  GLAQLHQL
Sbjct: 843  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 902

Query: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964
            RGRVGRSHHQAYAYLLTPP K IT DA KRLEAIA+ +DLGAGF LAT+DLEIRGAGELL
Sbjct: 903  RGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 962

Query: 965  GEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPD 1024
            G+ QSGQIQ+VGFTLYMEMLE+AV++++ G++P LD  L    E+ +R+PAL+PE Y+PD
Sbjct: 963  GDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYLPD 1022

Query: 1025 INTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIE 1084
            ++TRL +YK+IA+ A ++ L +L+VE+IDRFG LP+   NL+ I  LKL+A +L +RKI+
Sbjct: 1023 VHTRLILYKRIANAADEEALKDLQVEMIDRFGLLPEPTKNLVRITLLKLHAEQLGIRKID 1082

Query: 1085 AHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADML 1144
               +GG +EF     ++P+ L+KL+QSQP     +G T  KF +P+     R   +  +L
Sbjct: 1083 GGPQGGRIEFAAETPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERPEERFNTIEALL 1142

Query: 1145 K 1145
            +
Sbjct: 1143 E 1143