Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., ATP-dependent DNA helicase RecG from Pseudomonas syringae pv. syringae B728a

 Score =  220 bits (561), Expect = 3e-61
 Identities = 143/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%)

Query: 598 FKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQV 657
           F A   F  T  Q      V  D+ Q + M RL+ GDVG GKT VA  AA  A + G QV
Sbjct: 261 FLANLGFAPTGAQQRVGKEVAYDLSQPEPMLRLIQGDVGSGKTVVAALAALQALEAGYQV 320

Query: 658 AVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHK 717
           A++ PT +LA+QH+ NF+     L + V  L+     K +   L+ +A G   ++VGTH 
Sbjct: 321 ALMAPTEILAEQHYINFQRWLEPLGVGVAWLAGKLKGKARVASLEQIAGG-TPMVVGTHA 379

Query: 718 LLSSEIRFADLGLLIVDEEHRFGVRQ-----KEKVKAMRADVDILTLTATPIPRTLNMAM 772
           L   E++F +L L+I+DE+HRFGV+Q     K+ V  +     ++ +TATPIPRTL M+ 
Sbjct: 380 LFQDEVQFKNLALVIIDEQHRFGVQQRLALRKKGVGGLMCPHQLI-MTATPIPRTLAMSA 438

Query: 773 SGMRDLSIIATPPARRLAIKT-FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVA 831
               D SI+   P  R  + T  V  S    + E V      G Q Y++   +E  +++ 
Sbjct: 439 YADLDTSILDELPPGRTPVNTVLVADSRRLEVVERVRAACAEGRQAYWVCTLIEESEELT 498

Query: 832 A--------DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVP 883
                    +L   + + R+ + HG+M+  E   +M +F      LLV TT+IE G+DVP
Sbjct: 499 CKAAETTYEELSSALGDVRVGLIHGRMKPAEKAAIMAEFKQGALQLLVATTVIEVGVDVP 558

Query: 884 TANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLED 943
            ++ +I++  + LGLAQLHQLRGRVGR    ++  LL  PP  +++   +RL  +    D
Sbjct: 559 NSSLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPP--LSQIGRQRLGIMRETND 616

Query: 944 LGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
              GF +A  DLE+RG GE+LG  Q+G +Q
Sbjct: 617 ---GFVIAEKDLELRGPGEMLGTRQTGLLQ 643