Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1199 a.a., transcription-repair coupling factor from Synechocystis sp000284455 PCC 6803

 Score =  605 bits (1560), Expect = e-177
 Identities = 382/1090 (35%), Positives = 599/1090 (54%), Gaps = 67/1090 (6%)

Query: 31   LAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPDWETLPYDNFSPHQDII 90
            L ++ LA +   + L+     + A +   ++E      V  +P  E  PYD      +++
Sbjct: 78   LIVSSLAQSLEKNLLVITATLEEAGRWTAQLELMGWQTVNFYPTSEASPYDPGRLESEMV 137

Query: 91   SDRISRLYQLPS--LTRGITIVPVSTLLQRQSPRDFLL-QHTLIVKRGDHFSLDKLRLQL 147
              ++  L +L      +G  IV     LQ   P    L ++ L ++RG       L L L
Sbjct: 138  WGQMQVLAELIQGHQVKGKAIVATEKALQPHLPPVATLREYCLALRRGQEMDSKSLELTL 197

Query: 148  ENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSIAE 207
                Y     V   G+++ RG I+D+FP+ +  P R+++F DE++ IR FDP +QRS+ +
Sbjct: 198  ARLGYERGSTVETEGQWSRRGDIVDIFPVSAELPVRLEWFGDELEKIREFDPASQRSLDD 257

Query: 208  MDEIRLLPAH-----EFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYW 262
            +  + L P       E    A AI+   + W +  E     E ++ +        G++ +
Sbjct: 258  LTGLVLTPTSFDQVIEPALNAQAID--LSAWGEDAET----EQLFGK-------EGLQRF 304

Query: 263  QPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLRPLLPPNELW 322
              L F     L DYLP  + + V+ E E+           R+ +        L  PN   
Sbjct: 305  LGLAFTEPACLLDYLPTET-VCVLDEPEQCAAH-----SERWFEAVAQDWSALQLPNLPQ 358

Query: 323  LRKD--ELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFSE 380
            L ++   L    KT  Q    S   E     ++   +P+P +   HQ  +    LR   E
Sbjct: 359  LHRNFSALGDRLKTDFQYITLSEIHEANGDSLDISARPIPTMP--HQFAKLAEILRGKRE 416

Query: 381  QFTGKIIFSVES---EGRREALLELLQRIKLRPQ---SQNDF-SLACQQTEKYSLVL--- 430
             ++G  +    +     +    + LLQ      Q   +  D+ ++   Q ++ ++ L   
Sbjct: 417  IYSGLTLGQYSTWLISAQPSRTVSLLQEHDCAVQFIANPRDYPAIEKSQIQRTAVTLKYS 476

Query: 431  GSAE-RGFIYGDNQVALICESDLLGDRV------IQRRRKKDRKNVTNSDAVIRNLAELK 483
            G AE  GFI    ++ L+ + +L G         +++RR+   K V        ++ +L 
Sbjct: 477  GLAELEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRRATSKQV--------DINKLS 528

Query: 484  PGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEE 543
            PG  VVH  HGIG++L L  L       EY+M++Y  +  L VP  SL+ +SR+      
Sbjct: 529  PGDYVVHKSHGIGKFLKLDALAN----REYLMIQYA-DGILRVPADSLDSLSRFRHTGTR 583

Query: 544  AAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFP 603
              +LHK+GG+ W   + K  + V+ +A +LL++YAKR  + G+ +  D       + +FP
Sbjct: 584  PPELHKMGGKVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPWQQELEDSFP 643

Query: 604  FEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNG-KQVAVLVP 662
            ++ T DQ  A+  V  D+   + MDRLVCGDVGFGKTEVA+RA F A  +G KQVA+L P
Sbjct: 644  YQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAP 703

Query: 663  TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE 722
            TT+L QQH+   ++RFA  PI + +L+RF++A E+K+IL  +  G++DI+VGT ++L + 
Sbjct: 704  TTVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTS 763

Query: 723  IRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA 782
            ++F DLGLL++DEE RFGV QKEK+K ++ +VD+LTLTATPIPRTL M++SG+R++S+I 
Sbjct: 764  VKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIREMSLIT 823

Query: 783  TPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEAR 842
            TPP  R  IKT +      VIR A+  E+ RGGQV+++  ++E I+++   L ++VP AR
Sbjct: 824  TPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQMVPSAR 883

Query: 843  ITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLH 902
            I + HGQM E ELE  M  F     ++LVCTTIIE G+D+P  NTII++ A   GLAQL+
Sbjct: 884  IAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLY 943

Query: 903  QLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGE 962
            QLRGRVGRS  QA+A+LL P  K +T+ A  RL A+     LG+G+ LAT D+EIRG G 
Sbjct: 944  QLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGN 1003

Query: 963  LLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYI 1022
            LLG EQSGQ++++G+  YMEML+ A++ ++  + P ++D     T++++ L A +P +YI
Sbjct: 1004 LLGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKVED-----TQIDLPLTAFIPSDYI 1058

Query: 1023 PDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRK 1082
            PD+  +++ Y++I S+ S DEL ++ ++  DR+G LP     L  + +LK  A  L   +
Sbjct: 1059 PDLEEKMAAYRRITSIESTDELPKIALDWGDRYGMLPSPVEELFKVVKLKHLAKSLGFSR 1118

Query: 1083 IEAHERGGYV 1092
            I+   +   V
Sbjct: 1119 IKVEGKQNLV 1128