Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1153 a.a., transcription-repair coupling factor from Synechococcus elongatus PCC 7942

 Score =  634 bits (1634), Expect = 0.0
 Identities = 392/1075 (36%), Positives = 610/1075 (56%), Gaps = 50/1075 (4%)

Query: 31   LAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPDWETLPYDNFSPHQDII 90
            L  + L  A +   L+     + A +   ++E      +  +P  E+ PY+ F P  +++
Sbjct: 41   LVTSALVQAQSRSLLVICATLEEAGRWAAQLEGMGWPTLHFYPTSESSPYEAFDPESELV 100

Query: 91   SDRISRLYQLPSLTRGITIVPVSTLLQRQSPR-DFLLQHTLIVKRGDHFSLDKLRLQLEN 149
              ++  L  L   ++ + IV     LQ   P  + L      ++RG   +L +L  +   
Sbjct: 101  WGQLQVLADLLEQSQPVAIVATERSLQPHLPPVEALRPFCQTLQRGQEVNLGELADRFAQ 160

Query: 150  SSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSIAEMD 209
              Y  VD V   G+++ RG I+DLFP+ +  P R++ F DE++ +R FDP  QRS+ E++
Sbjct: 161  FGYERVDTVETEGQWSRRGDIIDLFPVSAELPVRLELFGDELERLREFDPATQRSLDEIE 220

Query: 210  EIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQPLFFEH 269
             +RL P       AAA+ +     R   +   E E    Q  +G  P G+  +  + FE 
Sbjct: 221  VLRLTPTSYASVIAAALAD-----RSLDDWLTEAEQEAWQ--EGQPPEGMRRFLGVAFER 273

Query: 270  SETLFDYLPANSQLLVVGELEKAI--DQFLTDV-DYRYDQRNIDPLRPLLPPNELWLRKD 326
            S +L DYLPA + + +   L+     D+++  V D+  +Q  + P           + +D
Sbjct: 274  SASLLDYLPAGTVIAIDEPLQCRAHSDRWIEHVQDHWQEQAQVWPA----------IHRD 323

Query: 327  -----ELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFSEQ 381
                 E    F+ +   QL SS  +     ++   + LPVL   HQ  +    +R   ++
Sbjct: 324  FQAAWEEIRCFQRIELSQLNSSS-DSELPVLDLAARSLPVLP--HQFGKLADFIRTERDR 380

Query: 382  FTGKIIFSVESEGRREALLELLQRIKLRPQ---SQNDFSLACQQTEKYSLVL----GSAE 434
             +   I+ V ++  R  ++ LLQ      Q   +  D+    + +EK   +     G AE
Sbjct: 381  HS---IWLVSAQPSR--MVALLQEHDCPSQFIPNPRDYPAIDRLSEKRVPIALKHSGLAE 435

Query: 435  -RGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493
              GF     ++ LI + +  G  V+       ++    S  V R+   LKPG  VVH  H
Sbjct: 436  LEGFSLPTFRLTLITDRECFGQHVLASPTYVRKRRRAASKQVDRD--RLKPGDYVVHRSH 493

Query: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553
            GIGR++ L++L   G + EY++L+Y  +  L V    +  +SRY G   E  +L  +  +
Sbjct: 494  GIGRFVKLESLSLSGEMREYLVLQYA-DGLLRVAADQMGSLSRYRGMGGERPELSSMTSK 552

Query: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613
            AW K + KA + VR VA +LL +YA+R  + G  +  D+      + +FP++ T DQ  A
Sbjct: 553  AWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAYPPDQPWQQELEESFPYQPTADQLKA 612

Query: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673
            + AV  DM   + MDRLVCGDVGFGKTEVA+RA F A   GKQVA+L PTT+L QQH+  
Sbjct: 613  VEAVKRDMESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTILTQQHYHT 672

Query: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733
             ++RFA  PI++ +L+RF++A E++ I Q +A G++D++VGTH+LLS   +F DLGLL+V
Sbjct: 673  LKERFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGTHQLLSKGTQFRDLGLLVV 732

Query: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793
            DEE RFGV QKEK+KA++  VD+LTL+ATPIPRTL MA+SG+R++S+I TPP  R  IKT
Sbjct: 733  DEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKT 792

Query: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853
             +   +   +R A+ +EI RGGQV+++  +VE I+ +A  L++++P  RI VAHGQM E 
Sbjct: 793  HLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEGIEAIATRLQEMLPSLRIAVAHGQMPEG 852

Query: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913
            ELE  M  F +   ++++CTTIIE+G+D+P  NTI+++ A   GL+QL+QLRGRVGR+  
Sbjct: 853  ELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFGLSQLYQLRGRVGRAGI 912

Query: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
            QA+A+L  P    ++  A +RL AI     LG+G+ LA  DLEIRG G LLG EQSGQ++
Sbjct: 913  QAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEIRGVGNLLGVEQSGQME 972

Query: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033
            ++GF LYMEML+++++ ++    P +DD     T++++ L A +P +YIPDI+ ++S Y+
Sbjct: 973  AIGFDLYMEMLQESLQEIRGQDIPQVDD-----TQIDLSLTAFIPADYIPDIDAKMSAYR 1027

Query: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHER 1088
             +AS  +  +L ++  +  DR+G LP +A  LL + ELK  A  L   +I    +
Sbjct: 1028 AVASAQTPADLLQIAADWSDRYGSLPASAQQLLRVMELKQVAKSLGFARIRTESK 1082