Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 817 a.a., ATP-dependent DNA helicase RecG from Synechococcus elongatus PCC 7942

 Score =  243 bits (621), Expect = 3e-68
 Identities = 141/382 (36%), Positives = 227/382 (59%), Gaps = 15/382 (3%)

Query: 598 FKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQV 657
           F    PF+ T  Q   +N +L+D+ Q   M+RLV GDVG GKT VA+ +   A   G Q 
Sbjct: 385 FYQLLPFQLTGAQQRVVNDILTDLQQPWPMNRLVQGDVGSGKTVVAIVSLLAAIQAGYQG 444

Query: 658 AVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHK 717
           A++ PT +LA+QH+    D    L + VE+L+    A ++++I + +A G++ +LVGTH 
Sbjct: 445 ALMAPTEVLAEQHYRKLVDWCTQLHLPVELLTGSTRAAKRREIQRSLATGELPLLVGTHA 504

Query: 718 LLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRD 777
           L+   + F +LGL+++DE+HRFGV Q+ K++    +  +LT+TATPIPRTL + + G  +
Sbjct: 505 LIQDPVDFQNLGLVVIDEQHRFGVAQRAKLQQKGVNPHVLTMTATPIPRTLALTLHGDLE 564

Query: 778 LS-IIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKV------ 830
           +S I   PP R+    T +  S+     + + REI +G QVY +   VE  +K+      
Sbjct: 565 VSQIDELPPGRQPIQTTALGPSDRHHAHDLMRREIAQGRQVYVVLPLVEESEKLDLRSAI 624

Query: 831 --AADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTI 888
                L ++ PE +I + HG+M   E +  +  F  ++ ++LV TT++E G+DVP A  +
Sbjct: 625 EEYQRLSQVFPEFQIGLLHGRMSSAEKDAAIAAFRDRQTDILVSTTVVEVGVDVPNATVM 684

Query: 889 IMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGF 948
           +++ A+  GL+QLHQLRGRVGR   ++Y  L++    + ++ A +RL+ +   +D   GF
Sbjct: 685 LIEHAERFGLSQLHQLRGRVGRGAARSYCLLMS---ASRSETAQQRLKVMEQSQD---GF 738

Query: 949 TLATHDLEIRGAGELLGEEQSG 970
            +A  DL +RG G++LG  QSG
Sbjct: 739 FIAEMDLRLRGPGQVLGTRQSG 760



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 29/233 (12%)

Query: 848  GQMRERELEKVMNDFYHQRFNLLVCT-TIIETGIDVPTANTIIMDRADSLGLAQLHQLRG 906
            G  R  +  ++          LLV T  +I+  +D      +++D     G+AQ  +L+ 
Sbjct: 477  GSTRAAKRREIQRSLATGELPLLVGTHALIQDPVDFQNLGLVVIDEQHRFGVAQRAKLQQ 536

Query: 907  RVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGF----TLATHDLEIRGAGE 962
            +    H        TP P+ +       LE ++ +++L  G     T A    +   A +
Sbjct: 537  KGVNPH--VLTMTATPIPRTLALTLHGDLE-VSQIDELPPGRQPIQTTALGPSDRHHAHD 593

Query: 963  LLGEE--QSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEE 1020
            L+  E  Q  Q+  V     + ++E++ +         LD  LR   E   RL  + PE 
Sbjct: 594  LMRREIAQGRQVYVV-----LPLVEESEK---------LD--LRSAIEEYQRLSQVFPEF 637

Query: 1021 YIPDINTRLSMYKQIASVAS-KDELAELKVE--LIDRFGKLPDAALNLLAIAE 1070
             I  ++ R+S  ++ A++A+ +D   ++ V   +++    +P+A + L+  AE
Sbjct: 638  QIGLLHGRMSSAEKDAAIAAFRDRQTDILVSTTVVEVGVDVPNATVMLIEHAE 690