Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  741 bits (1912), Expect = 0.0
 Identities = 453/1125 (40%), Positives = 654/1125 (58%), Gaps = 49/1125 (4%)

Query: 21   IGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALF--PDWETL 78
            IG +   + AL +AELA A      +     + A   L +V  F   ++ +   P W+ L
Sbjct: 21   IGPVPTGAEALVLAELARAGAPVAYILSDGQKVAD--LEQVLGFVAPDIPVLTLPGWDCL 78

Query: 79   PYDNFSPHQDIISDRISRLYQLPSLTR----GITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            PYD  SP  D  + R++ L  L +  R     I +V ++  LQR SP+D +       + 
Sbjct: 79   PYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTARP 138

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G+   +D L  +LE + +  V  V   GE+A RG ILD++  GS +P R+DFF D ++ I
Sbjct: 139  GNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLEAI 198

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254
            R+FDP +QR+I ++  + L P  E   T   I  FR ++   F A    +++Y  VS+G 
Sbjct: 199  RSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDDALYQAVSEGR 258

Query: 255  WPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNID---- 310
              AG+E+W PLF++  ET+FDYL     +      E A ++    +DY YD R       
Sbjct: 259  RYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSKLVLDY-YDARLASASPG 317

Query: 311  --------PLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVL 362
                    P +P+ PP+ L+L           L  V+L+         R    ++    L
Sbjct: 318  KSQVTQGTPYKPV-PPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQGL 376

Query: 363  -----AVEHQNKEPLA-----ALRQFSEQFT--GKIIFSVESEGRREALLELLQR---IK 407
                 A E  N          A++  +E+     K+I S  +EG  + LL++L       
Sbjct: 377  RWAKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHGLAN 436

Query: 408  LRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRK 467
            +RP        + +  E  S VL S E GF  GD  + +I E D+LGDR++  RR K RK
Sbjct: 437  IRPVKALSDIGSLKPGEAASAVL-SLEAGFETGD--LVVIGEQDILGDRLV--RRSKRRK 491

Query: 468  NVTNSDAVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVP 527
               +  A +  L E   G  VVH +HGIGR++GL+T+EA G   + + L Y ++AKL++P
Sbjct: 492  RGADFIAEVTGLDE---GSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLFLP 548

Query: 528  VSSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFK 587
            V ++ L+SRY     +A  L KLGG AW   + K  +++ D+A  L+ + A+R  +    
Sbjct: 549  VENIELLSRYGSEGTDAV-LDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPV 607

Query: 588  FHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAA 647
                   Y  F A FP++ET+DQ  +I+AV  D+ + + MDRLVCGDVGFGKTEVA+RAA
Sbjct: 608  LAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAA 667

Query: 648  FVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADG 707
            F+A  NG QVAV+VPTTLLA+QHF+ F DRF  LPIR++  SR   +K+     ++VA+G
Sbjct: 668  FIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEG 727

Query: 708  KVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRT 767
            K DI+VGTH LL S I+FA+LGLLI+DEE  FGV+ KE++K ++ DV +LTL+ATPIPRT
Sbjct: 728  KTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRT 787

Query: 768  LNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETI 827
            L +A++G+R+LS+I TPP  R+A++TF+   +  VIRE ++RE  RGGQ +++  +V  +
Sbjct: 788  LQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVSDL 847

Query: 828  DKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANT 887
             ++   L+  VPE ++ VAHGQM   ELE +MN FY  R+++L+ TTI+E+G+DVPTANT
Sbjct: 848  PEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANT 907

Query: 888  IIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAG 947
            +I+ RAD  GLAQL+QLRGRVGRS  +A+A    P  K +T  A +RL+ + SL+ LGAG
Sbjct: 908  LIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAG 967

Query: 948  FTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQT 1007
            F LA+HDL+IRGAG LLGEEQSG I+ VGF LY +MLE+AV  LK G+E   D     Q 
Sbjct: 968  FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELK-GEEEIHDTGWSPQ- 1025

Query: 1008 EVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLA 1067
             + +  P ++PEEY+PD+N RL +Y+++  +    E+     ELIDRFG LP    +LL 
Sbjct: 1026 -ISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHLLK 1084

Query: 1068 IAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQ 1112
            I  +K       V K++A  +G  V+F      NP  LV  +  Q
Sbjct: 1085 IVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQ 1129