Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., ATP-dependent DNA helicase RecG (RefSeq) from Shewanella amazonensis SB2B

 Score =  242 bits (618), Expect = 6e-68
 Identities = 153/390 (39%), Positives = 216/390 (55%), Gaps = 19/390 (4%)

Query: 598 FKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQV 657
           F  + PF  T+ Q+  +  + +DM +A  M RLV GDVG GKT VA  +A  A +NG QV
Sbjct: 259 FLESLPFAPTNAQSRVVAEIHADMTKATPMMRLVQGDVGSGKTLVAALSALAAIENGCQV 318

Query: 658 AVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHK 717
           A++ PT LLA+QH  NF   F  L ++V  L+     K + Q L+D+A G   ++VGTH 
Sbjct: 319 ALMAPTELLAEQHAANFARWFEPLGLKVGWLAGKLKGKARTQTLEDIASGAAQMIVGTHA 378

Query: 718 LLSSEIRFADLGLLIVDEEHRFGVRQ----KEKVKAMRADVDILTLTATPIPRTLNMAMS 773
           +   ++ F+ L L I+DE+HRFGV Q    +EK          L +TATPIPRTL M   
Sbjct: 379 IFQEQVSFSRLALTIIDEQHRFGVHQRLGLREKGIQQGFFPHQLIMTATPIPRTLAMTAY 438

Query: 774 GMRDLSIIATPPARRLAIKTFV-----RQSEDSVIREAVLREIMRGGQVYFLHNQVETID 828
              D SII   P  R  I T       R      +R+A L++  +   V  L  + E ++
Sbjct: 439 ADLDTSIIDELPPGRTPITTVAIPDTRRLDVIERVRQAALQDKRQAYWVCTLIEESEVLE 498

Query: 829 KVAAD-----LEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVP 883
             AA+     L++ +PE  I + HG+M+  E + +M DF   + +LLV TT+IE G+DVP
Sbjct: 499 CQAAEDTAGGLKEALPELGIGLVHGRMKGAEKQAIMADFKAGKLDLLVATTVIEVGVDVP 558

Query: 884 TANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLED 943
            A+ +I++  + LGLAQLHQLRGRVGR    ++  LL   P + T  A      +  L +
Sbjct: 559 NASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKAPLSFTAQA-----RLGVLRE 613

Query: 944 LGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
              GF +A  DLE+RG GE+LG  Q+G  Q
Sbjct: 614 SNDGFVIAQKDLELRGPGEVLGTRQTGLAQ 643