Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 1271 bits (3288), Expect = 0.0
 Identities = 648/1131 (57%), Positives = 837/1131 (74%), Gaps = 13/1131 (1%)

Query: 26   GASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHS---EVALFPDWETLPYDN 82
            G + AL +AE+  ++   TL+   D  TAL L  E+         ++ LFPD ETLPYD+
Sbjct: 26   GVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLKPRGIDICLFPDRETLPYDS 85

Query: 83   FSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDK 142
            FSPHQD+IS R+  L  L      + IVP++TL+ R  P+ FL  + LI+K+GD + L +
Sbjct: 86   FSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKAFLAANVLILKKGDRYQLQQ 145

Query: 143  LRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQ 202
            +R  L ++ Y  V+QV+  GE+A RGSILD+FP G+S+P RI+ FDDE+++IR FDP+ Q
Sbjct: 146  MRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLRIELFDDEVESIRHFDPETQ 205

Query: 203  RSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEA-RREPESVYSQVSKGTWPAGIEY 261
            RS  E+D IR+LPA EFPT + AIE FR R+R+ FE      ESVY  VS+   PAGIE 
Sbjct: 206  RSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNAAESVYQLVSRNLMPAGIEN 265

Query: 262  WQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLRPLLPPNEL 321
            + PLFF+ + TLFDYLP   Q++  G L +A +  L ++  RY+ R +DPLRPLLPP  L
Sbjct: 266  YLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHSRYEDRQVDPLRPLLPPKTL 325

Query: 322  WLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFSEQ 381
            +   +ELFA FK  P++ L+        G    +  PLP +   H+ K+PL +L  ++ Q
Sbjct: 326  YQTTEELFARFKLYPRIDLSGDE-----GDKTLEAAPLPDIRANHKLKQPLESLANWA-Q 379

Query: 382  FTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAERG--FIY 439
               +I F  ESEGRREALLELL +  L+P+              + LV+     G     
Sbjct: 380  GGQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLASDSPHGLVVAPLAMGCQLKM 439

Query: 440  GDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGIGRYL 499
            G +Q+A++CE++L G+RV Q RR+ D++   + D +I+NLAELK GQPVVH++HG+G Y 
Sbjct: 440  GKSQLAVVCETELFGERVSQERRR-DKQRQLSQDVLIKNLAELKVGQPVVHLEHGVGLYQ 498

Query: 500  GLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWVKAR 559
            GL+TL+ GG+V+EY+ LEY    KLYVPVS+L+LISR++ G +E+A L++LG E+W KA+
Sbjct: 499  GLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGNDESAPLNRLGNESWSKAK 558

Query: 560  RKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLS 619
            RKA EK+RDVAAELLDVYA+RE +PG    LD  +YA F   FPFEET DQ  AI AV+ 
Sbjct: 559  RKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGFPFEETVDQETAIKAVID 618

Query: 620  DMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFA 679
            DMCQ KAMDRLVCGDVGFGKTEVAMRAAF+A  +GKQV VLVPTTLLAQQHFENF+DRFA
Sbjct: 619  DMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVPTTLLAQQHFENFKDRFA 678

Query: 680  NLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRF 739
            + P+R+EV+SRF++AKEQ+ +L  + +GKVDI++GTHKLL++E+ F  LGLLI+DEEHRF
Sbjct: 679  DWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTELNFESLGLLIIDEEHRF 738

Query: 740  GVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSE 799
            GVRQKE++KAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RLA+KTFVR+ +
Sbjct: 739  GVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYD 798

Query: 800  DSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVM 859
             + +REA+LREI+RGGQVY+LHNQVETI+K A D+ +L+PEAR+  AHGQMRERELE+VM
Sbjct: 799  KATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEARVVTAHGQMRERELERVM 858

Query: 860  NDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYL 919
            +DFYHQRFN+LVCTTIIETGIDVP+ANTI++DRAD  GLAQLHQLRGRVGRSHHQAYAYL
Sbjct: 859  SDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLHQLRGRVGRSHHQAYAYL 918

Query: 920  LTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTL 979
            +TP PK +T DA KRLEAI +LEDLGAGF LAT DLEIRGAGELLG+EQSG I  +GF+L
Sbjct: 919  MTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSL 978

Query: 980  YMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIASVA 1039
            YMEMLE AV+ALK GKEP+L  +L  Q E+++R+PALLP++Y+ D+N RLS+YK+IA   
Sbjct: 979  YMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYVNDVNMRLSLYKRIAGCD 1038

Query: 1040 SKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNAD 1099
            ++  + E+KVELIDRFG LPDA  NLL +   K  A RL   KIE H RGG +EF     
Sbjct: 1039 TEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATKIEMHGRGGSIEFGEEHR 1098

Query: 1100 INPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQN 1150
            ++P F++ LL SQP++  MDGP KL+FT+P      R++ +  +L+  +Q+
Sbjct: 1099 VDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLELLLEQLEQH 1149