Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  777 bits (2006), Expect = 0.0
 Identities = 454/1154 (39%), Positives = 665/1154 (57%), Gaps = 52/1154 (4%)

Query: 30   ALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVAL--FPDWETLPYDNFSPHQ 87
            AL + ELA       +L V      L  L E   F H  V +  FP W+ +PYD  SP+ 
Sbjct: 25   ALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNV 84

Query: 88   DIISDRI---SRLYQLPSLTRG--ITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDK 142
            +I++ R+   SRL + P+   G  + +   S +LQR  PR  L +     + G    L K
Sbjct: 85   EIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGK 144

Query: 143  LRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQ 202
            L   L    Y   +QV  PGEYA RG I+D+FP G+ +P R+D F DE+D++R+FDP +Q
Sbjct: 145  LLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQ 204

Query: 203  RSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYW 262
            R+  + D + L P  E      +I  FR+ +R+ F      +++Y  +S G    G+E+W
Sbjct: 205  RTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPFMGMEHW 264

Query: 263  QPLFFEHSETLFDYLPANSQLL---VVGELEKAIDQFLTDVDYRYDQRNIDP-------- 311
             PLF E  +TLF Y+P     L   + G L    DQ     + R    ++          
Sbjct: 265  LPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDGAKASEKP 324

Query: 312  ----LRPLLPPNELWLRKDELFAHFK----------TLPQVQLTSSPIELRAGRMNAQVQ 357
                +   LPP  ++L +DE   H              P V      +    GR   +  
Sbjct: 325  GGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFLGRPGHEFA 384

Query: 358  PLPVLAVEHQNKEPLAALRQFSEQFTG---KIIFSVESEGRREALLELLQRIKLRP-QSQ 413
             +   A          ALR  ++       +++ +  + G RE +  +L+   L P  + 
Sbjct: 385  DIRARA----GGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTA 440

Query: 414  NDFSLACQQTEKYSLVLGSA-ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNS 472
              ++ A ++ +K ++VL    +RGF   D  +A+I E+D+LGDR+ +  RKK        
Sbjct: 441  ETWAEALERAKKATVVLTLILDRGFETPD--LAVISEADVLGDRLSRPVRKKKL-----G 493

Query: 473  DAVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLN 532
            D  I +++ L  G  VVH+DHGIG+Y GL+TL AGG   + + + Y +  +LYVPV ++ 
Sbjct: 494  DKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIE 553

Query: 533  LISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDR 592
            ++SRY G  +   QL KLGG AW   + K  +++RD+A +L+ V A R++K G       
Sbjct: 554  VLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPE 612

Query: 593  EQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATD 652
              Y  F A FP+ ETDDQ  AI   L D+   + MDRL+CGDVGFGKTEVA+RAAF    
Sbjct: 613  GLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAM 672

Query: 653  NGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDIL 712
            +G+QVAV+VPTTLLA+QH   F++RFA LP+R+  LSR  +A++ K + +++A G +DI+
Sbjct: 673  SGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIV 732

Query: 713  VGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAM 772
            VGTH LL+  +RF DLGLLIVDEE  FGV  KE++K MRADV +LTLTATPIPRTL +A+
Sbjct: 733  VGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLAL 792

Query: 773  SGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAA 832
            +G+R++SIIATPP  RLA++TFV   +  V+REA+LRE  RGGQ +++  ++  IDKV  
Sbjct: 793  TGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVME 852

Query: 833  DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDR 892
             L  LVP+ R  VAHGQM    LE+VM  F   ++++LV T I+E+G+D+P ANTII+ R
Sbjct: 853  RLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHR 912

Query: 893  ADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLAT 952
            AD  GLAQL+QLRGRVGR+  + YAYL  PP + ++K A KRL+ + +L+ LGAGFTLA+
Sbjct: 913  ADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLAS 972

Query: 953  HDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLRE-QTEVEM 1011
            HDL+IRGAG LLG+EQSG I+ VG  LY ++LE+AV A + G  P +++       ++++
Sbjct: 973  HDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQL 1030

Query: 1012 RLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAEL 1071
              P L+P+ Y+ D+  RL +Y++IA V  + E+ E+  E++DRFG LPD   NLL +  +
Sbjct: 1031 GTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTI 1090

Query: 1072 KLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLV 1131
            K+   R    K++A  +G  + F  N   NP  LV+ +      + +    KL +     
Sbjct: 1091 KVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWE 1150

Query: 1132 ERSARIQFVADMLK 1145
                RIQ +  +++
Sbjct: 1151 VARERIQGLGKLMR 1164