Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1147 a.a., transcription-repair coupling factor from Rahnella sp. WP5

 Score = 1480 bits (3831), Expect = 0.0
 Identities = 734/1138 (64%), Positives = 908/1138 (79%), Gaps = 5/1138 (0%)

Query: 16   GDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPDW 75
            GD + +G L G++ AL  A+++  HT   LL  PD Q AL+L  E++QF+ ++V    DW
Sbjct: 14   GDNRLLGQLTGSACALECAQISERHTGPILLIAPDMQNALRLRDEIQQFTDNKVLSIADW 73

Query: 76   ETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRG 135
            ETLPYD+FSPHQ+IIS R+S LYQLP++ RGI I+PV+TL+QR  P +FL  H L++K+G
Sbjct: 74   ETLPYDSFSPHQEIISSRLSSLYQLPTMERGIIILPVNTLMQRVCPHEFLHGHALVMKKG 133

Query: 136  DHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIR 195
               S DKLR QLE + YR VDQV   GE+A+RG++LDL+PMGS +P+RIDFFDDEID++R
Sbjct: 134  QQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPYRIDFFDDEIDSLR 193

Query: 196  TFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTW 255
             FD D QR+++E++ I LLPAHEFPT   AIE FR++WR++FE RR+ E VY QVSKGT+
Sbjct: 194  IFDVDTQRTLSEVEHINLLPAHEFPTDKNAIELFRSQWREKFEVRRDAEHVYQQVSKGTF 253

Query: 256  PAGIEYWQPLFFEHS-ETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLRP 314
            PAGIEYWQPLFF     TLF YLP N+ +L  G+LE A ++F  D   RY+ R +DP+RP
Sbjct: 254  PAGIEYWQPLFFSQPLTTLFSYLPENTLVLNTGDLEAAAERFWQDACQRYESRRVDPMRP 313

Query: 315  LLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAA 374
            LL P  LWLR + LF   K  P+VQL +  +  +A   N   + LP L+V+ QNK P+  
Sbjct: 314  LLEPENLWLRVESLFTELKAWPRVQLRTDSLPKKAANTNLSYEKLPDLSVQPQNKAPMDN 373

Query: 375  LRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAE 434
            LR+F+E F G ++FSVESEGRRE L +LL RIKL P        A     +Y +++G+ E
Sbjct: 374  LRRFNESFAGSLVFSVESEGRRETLQDLLARIKLMPTLITRIEEA-DIAGRY-IMIGACE 431

Query: 435  RGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHG 494
            RGF+  D Q+ALICESDLLG+RV   RR++D +   N+D +IRNLAEL+PGQPVVH++HG
Sbjct: 432  RGFLDADKQLALICESDLLGERVA--RRRQDSRRSINTDTLIRNLAELRPGQPVVHVEHG 489

Query: 495  IGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEA 554
            +GRYLGL TLE GG+ +EY++L Y  E KLYVPVSSL+LISRY+GGA+E+A LHKLGGEA
Sbjct: 490  VGRYLGLTTLETGGITAEYLILTYAGEDKLYVPVSSLHLISRYAGGADESAPLHKLGGEA 549

Query: 555  WVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAI 614
            W KAR+KAAEKVRDVAAELLD+YA+RE K GF F  D+ QY  F   FPFE T DQA AI
Sbjct: 550  WSKARQKAAEKVRDVAAELLDIYAQREAKSGFAFKHDKAQYQLFCQAFPFETTPDQAQAI 609

Query: 615  NAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENF 674
            NAVL+DM Q  AMDRLVCGDVGFGKTEVAMRAAF+A  N KQVAVLVPTTLLAQQHF+NF
Sbjct: 610  NAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAVSNNKQVAVLVPTTLLAQQHFDNF 669

Query: 675  RDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVD 734
            RDRFA+ P+R+E++SRF+SAKEQ  +L+D  +GKVDI++GTHKLL +++R+ DLGLLIVD
Sbjct: 670  RDRFASWPVRIEMMSRFRSAKEQNVVLEDAVEGKVDIIIGTHKLLQTDLRWKDLGLLIVD 729

Query: 735  EEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTF 794
            EEHRFGVR KE++KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR+A+KTF
Sbjct: 730  EEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRMAVKTF 789

Query: 795  VRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERE 854
            VR+ +  V+REA+LREI+RGGQVY+L+N VE I+K +  L +LVPEARI + HGQMRER+
Sbjct: 790  VREYDSLVVREAILREILRGGQVYYLYNDVENIEKASQRLAELVPEARIAIGHGQMRERD 849

Query: 855  LEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQ 914
            LE+VMNDF+HQRFN+LVCTTIIETGID+PTANTII++RAD  GLAQLHQLRGRVGRSHHQ
Sbjct: 850  LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909

Query: 915  AYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQS 974
            AYAYLLTPPPKA++ DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGE QSGQ+ S
Sbjct: 910  AYAYLLTPPPKAMSADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSGQMTS 969

Query: 975  VGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQ 1034
            +GF+LYME+LE AVEALK G+EP+L+DL   QTEVEMR+PALLPE++IPD+NTRLS+YK+
Sbjct: 970  IGFSLYMELLENAVEALKEGREPSLEDLTTSQTEVEMRMPALLPEDFIPDVNTRLSLYKR 1029

Query: 1035 IASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEF 1094
            IAS  ++ EL EL+VELIDRFG LPD A NLL IA L+L A  L +R+IE +ERGG++EF
Sbjct: 1030 IASAKTEGELDELRVELIDRFGTLPDGARNLLLIAVLRLKAKELGIRRIEGNERGGFIEF 1089

Query: 1095 YPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQNVL 1152
                 ++P FL+ LLQ QP++  +DGPTKLKF L L +R  R++FV DML  F ++++
Sbjct: 1090 GDKNRVDPGFLIGLLQKQPQVYRLDGPTKLKFVLDLTDRPKRLKFVGDMLSEFTEHLI 1147