Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., transcription-repair coupling factor from Rhodopseudomonas palustris CGA009

 Score =  784 bits (2024), Expect = 0.0
 Identities = 466/1144 (40%), Positives = 660/1144 (57%), Gaps = 41/1144 (3%)

Query: 27   ASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHS-EVALFPDWETLPYDNFSP 85
            A LA A+A    A      +   D     +L   +E F+   EV  FP W+  PYD  SP
Sbjct: 33   ADLARAVAAKPKAPAVSLTVICRDGPRMQQLARSLEFFAPDLEVLQFPAWDCQPYDRVSP 92

Query: 86   HQDIISDRISRLYQLPSLTRG----ITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLD 141
            H  I++ R++ L +L  LT      I +  V+  +QR   R+ +    L V  G+   +D
Sbjct: 93   HAGILAQRVTTLAKLSRLTGSDKPLIVLTTVNAAVQRVPVREIIAAQALSVAPGNVVPMD 152

Query: 142  KLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDN 201
             +   LE++ Y     V   GEYA RG ILDLFP G   P R DFF D++++IRTFD + 
Sbjct: 153  SIVAWLEHNGYSRASTVREAGEYAVRGGILDLFPAGLDQPVRFDFFGDQLESIRTFDAET 212

Query: 202  QRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEY 261
            QR++  M  + L+P  EF      I  FR  +   F A    + +Y+ VS+G    G+E+
Sbjct: 213  QRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAFGAPHPDDQLYAAVSEGRRHPGMEH 272

Query: 262  WQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLRP------- 314
            W PLF E  +TLFDYL      +     + A ++F    DY YD R     +P       
Sbjct: 273  WLPLFQERMDTLFDYLKGTPVAIEPQSEDAARERFKQIADY-YDARREAMEQPGSGAIYK 331

Query: 315  LLPPNELWLRKDELFAHFKTLPQVQLTSSPIE----------LRAGRMNAQVQPLPVLAV 364
             LPP+ L+L   E  A  + +   +LT   +            RAGR  A     P  A 
Sbjct: 332  PLPPDRLYLTDSEWTARLEGVALARLTPFALPDDTSDVIDAGARAGRNFA-----PERAD 386

Query: 365  EHQNK-EPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQT 423
             + N  E L A     +    K++ ++ SEG R+ +  +L+  KL   +  +     Q T
Sbjct: 387  SNVNVFETLVAHVYALQAARKKVVIALWSEGSRDRMASMLKDHKLVALTSVNSWRTVQAT 446

Query: 424  EKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELK 483
             +   +L        +  +  A+I E D+LGDR++ R+RK  +K     D  I  +  L 
Sbjct: 447  PRNETMLAVVGLESGFETDAFAVITEQDVLGDRLV-RQRKASKK----LDNFISEVTSLS 501

Query: 484  PGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEE 543
             G  VVH++HGIGR++GLQTLE GG   + V L Y N+ KL++PV ++ L+SRY G    
Sbjct: 502  TGDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHYANDTKLFLPVENIELLSRY-GSDGT 560

Query: 544  AAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFP 603
            + +L KLGG  W   + K   ++R +A EL+ V A+R ++   K  +  + Y  F A FP
Sbjct: 561  SVELDKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLPIQPQLYDEFCARFP 620

Query: 604  FEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPT 663
            ++ET+DQ  AINA L D+ +   MDRLVCGDVGFGKTEVA+RAAF    +GKQVAV+VPT
Sbjct: 621  YDETEDQLAAINAALGDLEKGTPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPT 680

Query: 664  TLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEI 723
            TLLA+QH + F +RF   P+ V   SR  SAKE  Q+ + +ADG  DI+VGTH LL   I
Sbjct: 681  TLLARQHAKTFTERFRGFPVNVGQASRLVSAKELSQVKKGIADGTTDIVVGTHALLGKSI 740

Query: 724  RFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 783
            +F DLGL+IVDEE  FGV  KEK+K +R++V +LTL+ATPIPRTL +AM+G+RDLSIIA+
Sbjct: 741  KFKDLGLVIVDEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIAS 800

Query: 784  PPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARI 843
            PP  RLA++TFV   +  +IREA+LRE  RGGQ +++  +++ + +V   L+K VPE ++
Sbjct: 801  PPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIDDLAEVKDFLDKHVPEMKV 860

Query: 844  TVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQ 903
             VAHGQM    +E +M+ FY  +F++L+ TTI+E+G+D+P ANT+I+ RAD  GLAQL+Q
Sbjct: 861  AVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQ 920

Query: 904  LRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGEL 963
            LRGRVGRS  +AYA L T P   IT  A +RL+ + SLE LGAGF LA+HDL+IRGAG L
Sbjct: 921  LRGRVGRSKLRAYA-LFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNL 979

Query: 964  LGEEQSGQIQSVGFTLYMEMLEQAVEALKSG--KEPALDDLLREQTEVEMRLPALLPEEY 1021
            LGEEQSG I+ VGF LY +MLE+A+  LK+G   EP  D   R   ++ + +P L+P+++
Sbjct: 980  LGEEQSGHIKEVGFELYQQMLEEAITNLKAGIVDEPVAD---RWSPQITIGMPVLIPDDF 1036

Query: 1022 IPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVR 1081
            + D++ RLS+Y+++A + + +E+     EL DRFG LPD    L  IA +K    R  V 
Sbjct: 1037 VADLSVRLSLYRRLADLDTDEEIDNFAAELRDRFGPLPDEVRYLFKIAAIKAYCRRANVE 1096

Query: 1082 KIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVA 1141
            K++A  +G  + F  NA   P  LV  ++       +    K+ F         R+    
Sbjct: 1097 KVDAGPKGVVITFRDNAFAQPDKLVFFIKRHGDAAKVRPDMKVVFFQVWETPEERLMGTT 1156

Query: 1142 DMLK 1145
            D+LK
Sbjct: 1157 DILK 1160