Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1119 a.a., transcription-repair coupling factor from Parabacteroides merdae CL09T00C40

 Score =  531 bits (1367), Expect = e-154
 Identities = 274/670 (40%), Positives = 427/670 (63%), Gaps = 13/670 (1%)

Query: 426  YSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPG 485
            ++ V  +   GF     +V L  +  L  DR  +   K D+         ++ L +   G
Sbjct: 376  FTSVNKTIHEGFADETLRVCLFTDHQLF-DRFHKFNLKSDKARSGKLSLSLKELNQFTTG 434

Query: 486  QPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSG-GAEEA 544
              +VHIDHG+G++ GL   E  G + E + L YQN   ++V + SL+ +S+Y G  + E 
Sbjct: 435  DYIVHIDHGVGQFGGLVRTEVNGKMQEAIRLIYQNNDIIFVSIHSLHKLSKYKGKDSGEP 494

Query: 545  AQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPF 604
             +L KLG  AW K + +   KV+D+A +L+ +Y+KR+ + GF +  D       +A+F +
Sbjct: 495  PKLSKLGTGAWEKMKERTKSKVKDIARDLILLYSKRKQEKGFAYSPDSFMQHELEASFIY 554

Query: 605  EETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTT 664
            E+T DQ  A   V +DM   + MDRL+CGDVGFGKTEVA+RAAF A  + KQVAVLVPTT
Sbjct: 555  EDTPDQMKATADVKADMENDRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTT 614

Query: 665  LLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIR 724
            +LA QH++ F +R  + P R+E +SR ++AKE ++ L+D+ +G ++I++GTH+++  ++ 
Sbjct: 615  VLAFQHYQTFSERLKDFPCRIEYISRARTAKEIRETLKDLKEGNINIIIGTHRIVGKDVT 674

Query: 725  FADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 784
            F DLGLLI+DEE +FGV  KEK++ ++A+VD LT+TATPIPRTL  ++ G RDLS I TP
Sbjct: 675  FKDLGLLIIDEEQKFGVSVKEKLRQLKANVDTLTMTATPIPRTLQFSLMGARDLSSITTP 734

Query: 785  PARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARIT 844
            P  R  ++T V +    +IREA+  E+ R GQV+F++N+++ I ++ A +++ VP+ARI 
Sbjct: 735  PPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVKREVPDARIA 794

Query: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904
            V HGQM   +LEK++ DF +  +++L+ T+I+E+GIDVP ANTII++ A   GL+ LHQL
Sbjct: 795  VGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQL 854

Query: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964
            RGRVGRS+ +A+ YLL+PP  ++T++A +RL+AI +  +LG+G  +A  DL+IRGAG +L
Sbjct: 855  RGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNML 914

Query: 965  GEEQSGQIQSVGFTLYMEMLEQAVEALKSGK-----------EPALDDLLREQTEVEMRL 1013
            G EQSG I  +G+  Y ++LE+AV+ LK+ +            P        +T +E  L
Sbjct: 915  GAEQSGFIADLGYETYQKILEEAVDELKAEEFADLYSNATENRPDTGSEYVRETYIESDL 974

Query: 1014 PALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKL 1073
              + P  YIP+ + R+S+Y+++  +  + ++      L DRFGK+P     L+ +  L+ 
Sbjct: 975  ELMFPPTYIPNDSERVSLYRELDKMEEERDILAFTERLKDRFGKVPKEGKELIRVVRLRR 1034

Query: 1074 NAMRLKVRKI 1083
             A  L + K+
Sbjct: 1035 MAKTLGMEKV 1044



 Score = 90.5 bits (223), Expect = 7e-22
 Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 4/195 (2%)

Query: 24  LHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSE-VALFPDW--ETLPY 80
           L+G+  A+ IA L +      +  + D + A    H++ Q +  + +  FP      + Y
Sbjct: 36  LNGSGAAMTIASLFSKRRGSYVCVLNDLEDAGYFYHDLVQLTGGDGIYFFPSAYRRAIKY 95

Query: 81  DNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSL 140
            +  P  +I+   +    Q P+    I   P   L ++   R+ L ++TL +  G+    
Sbjct: 96  GHVDPANEILRTEVLSTLQDPTAPFIIVTYP-EALAEKVISREVLKENTLKISVGERLDN 154

Query: 141 DKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPD 200
             +   L+   +  VD V+ PG+YA RGSILD+F      P+RIDFF +E++TIR+FD +
Sbjct: 155 MFVSDVLDEYGFEQVDYVYEPGQYAMRGSILDVFSFSYEFPYRIDFFGNEVETIRSFDVE 214

Query: 201 NQRSIAEMDEIRLLP 215
            Q S  ++D I ++P
Sbjct: 215 TQLSKEKLDSIYIVP 229