Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., transcription-repair-coupling factor Mfd from Phaeobacter inhibens DSM 17395

 Score =  736 bits (1899), Expect = 0.0
 Identities = 429/1091 (39%), Positives = 625/1091 (57%), Gaps = 55/1091 (5%)

Query: 69   VALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRG--ITIVPVSTLLQRQSPRDFLL 126
            V  FP W+ LPYD  SP+ DI + R++ L  L     G  + +  ++   QR   R  L 
Sbjct: 57   VISFPGWDCLPYDRVSPNADIAAARMATLAALVHQMPGQFVLLTTLNAATQRVPARQVLK 116

Query: 127  QHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDF 186
                + +       + LR  L    +     V  PG++A RG I+D++P G S P R+D 
Sbjct: 117  DAAFVAEVDRRIDEEALRGYLTRMGFTKSPTVMEPGDFAVRGGIIDIYPPGQSGPVRLDL 176

Query: 187  FDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESV 246
            F D +D  R FDP  QR+  ++  + L P  E     AA+  FR  +R  F A    + +
Sbjct: 177  FGDVLDGARRFDPATQRTTEKLSVVELAPVSEVILDEAAVTRFRQNYRIEFGAAGTDDPL 236

Query: 247  YSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLV-------VGELEKAIDQFLTD 299
            Y  VS G    GIE+W P F E  ETLFDYLP  +  L        +   +  +DQ+ T 
Sbjct: 237  YEAVSAGRKYQGIEHWLPFFHERLETLFDYLPQATVTLDDQVTPARLARWDSIVDQYETR 296

Query: 300  VDYRYDQRNIDPLRPLLPPNELWLRKDELFA--------HFKTLPQVQLTSSPIELRAG- 350
                  +  +D +   +PP  L+L  D   A         F  LPQ    S P  + AG 
Sbjct: 297  KIAMAQKGRMDTVYKPVPPGLLYLDDDAWEAAIGDHRVIQFHPLPQA---SGPGVIDAGG 353

Query: 351  RMNAQVQPLPVLAVEHQNKEPLAALRQFSEQF-----TGKIIFSVESEGRREALLELLQR 405
            R+     P        +  E ++  +  ++        G ++ +  SEG RE L  L++ 
Sbjct: 354  RIGRNFSP-------ERQLESVSLFKSLADHIKARMQVGPVVVASYSEGARERLTGLIED 406

Query: 406  IKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKD 465
              L      +      ++  + L + + E GF   D  + +I E D+LGDR+I R  KK 
Sbjct: 407  EGLAEVIAINDGTRIGKSGLH-LAVWALEHGFETDD--LTVISEQDVLGDRLI-RAPKKR 462

Query: 466  RKNVTNSDAVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLY 525
            RK    ++  +     L PG  VVH+DHGIGRY GL+ + A G   E ++LEY   +KLY
Sbjct: 463  RK----AENFLTETQSLSPGDLVVHVDHGIGRYKGLEVVTAAGAAHECILLEYAEHSKLY 518

Query: 526  VPVSSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPG 585
            +PV ++ L+S+Y     +   L +LGG AW   + K  E++R++A  L+ V A+R ++  
Sbjct: 519  LPVENIELLSKYG---HDEGLLDRLGGGAWQAKKAKLKERIREMADRLIRVAAERALRKA 575

Query: 586  FKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMR 645
                     +  F A FP++ETDDQ  AI+ V+ D+     MDRL+CGDVGFGKTEVAMR
Sbjct: 576  PMMDPPPHAWEEFSARFPYQETDDQLRAISEVMEDLQSGSPMDRLICGDVGFGKTEVAMR 635

Query: 646  AAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVA 705
            AAF+A  +G QVA++ PTTLLA+QH   F  RF   P+ V  LSRF +AKE  +  + +A
Sbjct: 636  AAFIAAMSGVQVAIVAPTTLLARQHAAAFAQRFRGFPLEVRQLSRFVTAKEAAKTREGMA 695

Query: 706  DGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIP 765
             G +DI+VGTH LL+  +RF +LGLLI+DEE  FGV  KE++K MR+D+ +LTLTATPIP
Sbjct: 696  KGTIDIVVGTHALLAKSVRFQNLGLLIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIP 755

Query: 766  RTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVE 825
            RTL ++++G+RDLSII TPP  RLAI+T+V + +   IREA+LRE  RGGQ +++  ++ 
Sbjct: 756  RTLQLSLTGVRDLSIIGTPPVDRLAIRTYVSEFDAVTIREALLREHYRGGQSFYVVPRIT 815

Query: 826  TIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTA 885
             +  V A L++ +PE    VAHGQ+   +L+  MN FY  +F++L+ TTI+E+G+D+PTA
Sbjct: 816  DLPDVEAFLQEQLPELSYVVAHGQLAAGDLDDRMNAFYDGKFDVLLATTIVESGLDIPTA 875

Query: 886  NTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLG 945
            NT+++ RAD  GLAQL+Q+RGRVGRS  +AYAYL T P   +T  A KRL  + SL+ LG
Sbjct: 876  NTMVVHRADMFGLAQLYQIRGRVGRSKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLG 935

Query: 946  AGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPAL---DDL 1002
            AGF+LA+ DL+IRGAG LLGEEQSGQ++ VG+ LY  MLE+A+  +KSG+   L   DD 
Sbjct: 936  AGFSLASQDLDIRGAGNLLGEEQSGQMRDVGYELYQSMLEEAIAKIKSGELEGLSGSDDQ 995

Query: 1003 LREQTEVEMRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAA 1062
               Q  + + +P L+PE Y+PD++ RL +Y++++ +++K EL     ELIDRFG LP   
Sbjct: 996  WAPQ--INLGVPVLIPENYVPDLDVRLGLYRRLSDLSTKVELEGFAAELIDRFGALPKEV 1053

Query: 1063 LNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPT 1122
              L+ +  +K    R  + K++   +G  ++F+ +   +P  LV+ +Q+Q      DG  
Sbjct: 1054 NTLMLVVRIKAMCKRAGIAKLDGGPKGATIQFHNDKFASPQGLVEFIQAQ------DGLA 1107

Query: 1123 KLKFTLPLVER 1133
            K+K    +V R
Sbjct: 1108 KVKDNKIVVRR 1118