Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 701 a.a., ATP-dependent DNA helicase RecG from Pedobacter sp. GW460-11-11-14-LB5

 Score =  240 bits (613), Expect = 2e-67
 Identities = 147/426 (34%), Positives = 246/426 (57%), Gaps = 19/426 (4%)

Query: 559 RRKAAEKVRDVAAELLDVYAKREIK-PGFKFHLDREQYATFKATF-PFEETDDQAMAINA 616
           RR   E++  +  +LL     R++K  G  F    E+   F   F PFE T+ Q   +  
Sbjct: 223 RRLKFEELFFIQLQLLHNKHLRQLKFKGVTFEKVGEKVNRFYNEFLPFELTNAQKRVVKE 282

Query: 617 VLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRD 676
           +  D  +   M+RLV GDVG GKT VA+ +  +A DNG Q  ++ PT +LA+QH+ +   
Sbjct: 283 IRIDTQRGVQMNRLVQGDVGSGKTAVALMSMLLANDNGYQACMMAPTEILARQHYASITS 342

Query: 677 RFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEE 736
              +  +RV +L+     KE+  + + +  G++DIL+GTH L+  +++F +LGL+++DE+
Sbjct: 343 LVTDDLVRVAILTGNTKKKERTILHEQLESGEIDILIGTHALIEDKVQFRNLGLVVIDEQ 402

Query: 737 HRFGVRQKEKV-KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT-F 794
           HRFGV Q+ K+ +       IL +TATPIPRTL M + G  D+SII   PA R  I+T  
Sbjct: 403 HRFGVEQRAKLWRKNIIPPHILVMTATPIPRTLAMTLYGDLDVSIIDELPAGRKPIETKH 462

Query: 795 VRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDK-----VAADLEKLV-----PEARIT 844
           + + +   +   + +EI +G QVY ++  ++  +K     + A +E+L      P+ +++
Sbjct: 463 LFEGQRLRMFGFMKQEIAKGRQVYIVYPLIKESEKLDLLHLEAGIEQLSYQFPRPDYQMS 522

Query: 845 VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904
           + HGQM   + +  M  F   +  ++V TT+IE G++VP A+ ++++ A+  GL+QLHQL
Sbjct: 523 IVHGQMPNADKQFEMQQFIDGKSQIMVATTVIEVGVNVPNASVMVIENAERFGLSQLHQL 582

Query: 905 RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964
           RGRVGR   Q++  L++     ++K+   RLE +    +   GF ++  DL++RG G++ 
Sbjct: 583 RGRVGRGAEQSFCILMS--GNKLSKEGKIRLETMVRTNN---GFEISEIDLQLRGPGDIT 637

Query: 965 GEEQSG 970
           G +QSG
Sbjct: 638 GTQQSG 643