Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1112 a.a., transcription-repair coupling factor from Pedobacter sp. GW460-11-11-14-LB5

 Score =  605 bits (1560), Expect = e-177
 Identities = 380/1067 (35%), Positives = 585/1067 (54%), Gaps = 80/1067 (7%)

Query: 32   AIAELANAHTSHT--LLAVPDPQTALKLLHEVEQFSHSEVALFPDWETLPYDNFSPHQDI 89
            AI  L++    H   L  +PD + A     ++E     +V LFP      +D        
Sbjct: 42   AIVALSSYFLLHKPILFVLPDREEAAYFQSDLESVLDKQVLLFPSSYRKSFDFTQVDTAN 101

Query: 90   ISDRISRLYQL--PSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLRLQL 147
            +  R   L +L   S    I +     + ++   R  L ++TL +  G    +D +   L
Sbjct: 102  VLARAEVLNELNHDSEYGKIVVSYPEAIAEKVIDRSALEKNTLEISLGAKLGIDFINEFL 161

Query: 148  ENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSIAE 207
             +  +   D V+ PG+++ RG I+D+F   S  P+RI+FF DE+++IR+F+ ++Q S+ +
Sbjct: 162  IDYDFDRRDFVYEPGQFSIRGGIVDIFSFSSDLPYRIEFFGDEVESIRSFEIESQLSVED 221

Query: 208  MDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQPLFF 267
            +  + ++P                      +A+   ES  S +        I+    L+F
Sbjct: 222  VKSLTIVP--------------------NVQAKFLTESNISILDY------IDQDTQLWF 255

Query: 268  EHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLRPLLPPNELWLRKDE 327
            +  E   D + A  +  V  EL KA    L   D   +   IDP        +     ++
Sbjct: 256  KDVEFTLDIIKAGFKKAV--ELWKA----LPAADKNQNPEWIDP--------KFAFTDEK 301

Query: 328  LFA-HFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFSEQFTGKI 386
            L   H +  P ++           R   + +P P       NK+    +    E     I
Sbjct: 302  LLGDHLQDFPIIEFGKQFFYKTDDRFEFETKPQPSF-----NKDFNLLIHNLKENEKEGI 356

Query: 387  IFSV--ESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSAERGFIYGDNQV 444
            +  +  +S  + E L  +L+ I               +T K++ +      GF+    Q 
Sbjct: 357  VNFIFTDSPKQIERLYAILEDI--------------DKTAKFTPINSMLREGFVDPQIQT 402

Query: 445  ALICESDLLGDRVIQRRRKKDRKNVTNSDAV-IRNLAELKPGQPVVHIDHGIGRYLGLQT 503
            A   +  +  DR  + + KK  +    S A+ +++L ELK G  V HIDHGIG+Y GL+ 
Sbjct: 403  AFYTDHQIF-DRYYKYKLKKGYQK---SQAITLKDLRELKSGDYVTHIDHGIGKYAGLEK 458

Query: 504  LEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWVKARRKAA 563
            +E  G   E + L Y +   LYV ++SLN I++YSG      +++KLG +AW K ++   
Sbjct: 459  VEVNGKTQEMIRLIYADNDLLYVNINSLNRIAKYSGKESGVPKMNKLGTDAWDKLKKTTK 518

Query: 564  EKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQ 623
            +KV+D+A +L+ +YA R+ + G  F  D       +A+F +E+T DQ  A   V  DM  
Sbjct: 519  KKVKDIARDLIKLYALRKTQAGTAFSPDSYLQTELEASFIYEDTPDQLKATQDVKKDMES 578

Query: 624  AKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPI 683
               MDRLVCGDVGFGKTE+A+RAAF A   GKQ A+LVPTT+LA QHF+ F  R  + P+
Sbjct: 579  PHPMDRLVCGDVGFGKTEIAVRAAFKAVAEGKQAAILVPTTILALQHFKTFSSRLKDFPV 638

Query: 684  RVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQ 743
             V+ ++RFK++K+ K  L + A GKVDIL+GTH+LLS +++F DLG++I+DEE +FGV  
Sbjct: 639  TVDYINRFKTSKQIKDTLAEAAAGKVDILIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTA 698

Query: 744  KEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSEDSVI 803
            KE++KA+R +VD LTLTATPIPRTL+ ++ G RDLSII+TPP  R  + T +    D +I
Sbjct: 699  KERLKAVRVNVDTLTLTATPIPRTLHFSLMGARDLSIISTPPPNRQPVSTELHVFNDKLI 758

Query: 804  REAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFY 863
            +EAV  E+ RGGQV+F+HN+V  + ++   ++KLVP+ARI +AHGQ+   +LE VM DF 
Sbjct: 759  QEAVQFELDRGGQVFFIHNRVNDLMQLGGLIQKLVPKARIGIAHGQLDGDQLEDVMLDFI 818

Query: 864  HQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPP 923
            +   ++LV TTIIE G+D+P ANTII++ A   GL+ LHQ+RGRVGRS+ +A+ YLL+PP
Sbjct: 819  NGEKDVLVATTIIEAGLDIPNANTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPP 878

Query: 924  PKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGFTLYMEM 983
               +T +A KRL AI    DLG+GF +A  DL+IRG+G LLG EQSG I  +GF +Y ++
Sbjct: 879  LSTLTSEARKRLSAIEEFSDLGSGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKI 938

Query: 984  LEQAVEALKSGK-------EPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIA 1036
            L++A++ LK  +       EPA   +    T+V+  L   +P+ YI +I  R ++Y +++
Sbjct: 939  LDEAIQELKEAEFKGLFENEPARPFV--GFTQVDTDLELYIPDAYITNITERYNLYTELS 996

Query: 1037 SVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKI 1083
             + ++ ELA  +  L DRFG +P     +L++  L+    +L   KI
Sbjct: 997  KLDNEAELAIFEKHLADRFGPVPSQVKTMLSVVRLQWLGKKLGFEKI 1043