Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., ATP-dependent DNA helicase RecG (RefSeq) from Shewanella loihica PV-4

 Score =  239 bits (610), Expect = 5e-67
 Identities = 155/390 (39%), Positives = 217/390 (55%), Gaps = 25/390 (6%)

Query: 598 FKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQV 657
           F A+ PF+ T  Q   +  +  D+ +A  M RLV GDVG GKT VA  AA  A ++G QV
Sbjct: 259 FLASLPFKPTGAQQRVVADITQDLDKAHPMMRLVQGDVGSGKTLVAALAALQAIESGYQV 318

Query: 658 AVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHK 717
           A++ PT LLA+QH  NF   F +L + V  L+     K + Q LQ +  G+  I++GTH 
Sbjct: 319 AMMAPTELLAEQHANNFAAWFEHLGLTVGWLAGKLKGKARAQSLQQIKSGEAHIVIGTHA 378

Query: 718 LLSSEIRFADLGLLIVDEEHRFGVRQ----KEKVKAMRADVDILTLTATPIPRTLNMAMS 773
           +   ++ F  L L+I+DE+HRFGV Q    +EK          L +TATPIPRTL M   
Sbjct: 379 IFQEQVEFNRLALIIIDEQHRFGVHQRLGLREKGIRQGFHPHQLIMTATPIPRTLAMTAY 438

Query: 774 GMRDLSII-ATPPAR----RLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVE--- 825
              D SII   PP R     +AI    R      +R+A L++   G Q Y++   +E   
Sbjct: 439 ADLDTSIIDELPPGRTPVTTVAISDNRRGEVIDRVRQAALQD---GRQAYWVCTLIEESE 495

Query: 826 -----TIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGI 880
                  +  A +L++L+PE  I + HG+M+  E + +M+ F      LLV TT+IE G+
Sbjct: 496 VLECQAAEDTAEELKQLLPELAIGLVHGRMKPAEKQAIMDAFKAGSIQLLVATTVIEVGV 555

Query: 881 DVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIAS 940
           DVP A+ +I++  + LGLAQLHQLRGRVGR    ++  LL   P  ++  A +RL     
Sbjct: 556 DVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKAP--LSHTATQRL---GV 610

Query: 941 LEDLGAGFTLATHDLEIRGAGELLGEEQSG 970
           L D   GF +A  DLEIRG GE+LG +Q+G
Sbjct: 611 LRDSNDGFVIAQKDLEIRGPGEVLGTKQTG 640