Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 1327 bits (3434), Expect = 0.0
 Identities = 665/1159 (57%), Positives = 886/1159 (76%), Gaps = 11/1159 (0%)

Query: 1    MTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHE 60
            M   S+L+    +G    + +  L GA+ A+++A+L   ++S TL+  PD  +AL+L  E
Sbjct: 1    MNAFSILTPPKVKGVKSPQTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAE 60

Query: 61   VEQFSHSE---VALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQ 117
            +      +   V LFPD ETLPYD+FSPHQD++S R+  L ++PS    + IVP+STL+ 
Sbjct: 61   LGYLLAPKSIPVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMV 120

Query: 118  RQSPRDFLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMG 177
            +  P+ FL  + L++ +GD++ L+ +R QL N+ Y HV+QV+  GE+A RGSI+DLFPMG
Sbjct: 121  KLPPQSFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMG 180

Query: 178  SSDPFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRF 237
            +  P+RI+ FDDE+++IR FDP+ QRS  E++ IRLLPA EFPT  AAIE FR R+R++F
Sbjct: 181  AQSPYRIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQF 240

Query: 238  EAR-REPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQF 296
            E   +EPES+Y  VS+   PAGIE + PLFF+ + +LFDYLP   QL+ VG+LE A    
Sbjct: 241  EVVVKEPESIYQMVSRKVMPAGIESYLPLFFDETASLFDYLPGECQLVQVGDLENAAKHH 300

Query: 297  LTDVDYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQV 356
            L +++ RY+ R +DPLRPLLPP +L+L  +++F  FK LP+  +  +  E     + AQ+
Sbjct: 301  LQEINQRYENRRVDPLRPLLPPKDLYLLTEQVFEAFKQLPRFLIKGN--EATGTCVEAQL 358

Query: 357  QPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDF 416
            + LP +A  H+ K+PL +L++F+   T  I+F VESEGRREALLELL +I+++P   +  
Sbjct: 359  EALPNIAANHKLKQPLISLKEFANGGT-PILFCVESEGRREALLELLAKIEIKPALLDHL 417

Query: 417  SLACQQTEKYSLVLGSAERGFIYGDNQV---ALICESDLLGDRVIQRRRKKDRKNVTNSD 473
                 + + + L++    +G IY   +    AL+CE++L G R+ Q+RR+ D++   + D
Sbjct: 418  DSFSHKPQPFGLIVAPLSQGAIYHPKKGPSWALVCETELFGQRIAQQRRR-DKQRQVSQD 476

Query: 474  AVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNL 533
            A+I++LAELK GQP+VH+DHG+  Y GL+TL+ GG+V+EY+ LEY    KLYVPV+SLNL
Sbjct: 477  ALIKDLAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNL 536

Query: 534  ISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDRE 593
            IS+YS GA++A QL+KLG E+W KA+RKA EK+RDVAAELLDVYA+R+ +PG    LDRE
Sbjct: 537  ISQYSVGADDAPQLNKLGNESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDRE 596

Query: 594  QYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDN 653
            +YA F  +FPFEET DQ  AI+AVL+DMC   +MDRLVCGDVGFGKTEVAMRAAFVA ++
Sbjct: 597  EYAQFAGSFPFEETVDQETAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVND 656

Query: 654  GKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILV 713
            GKQVA+LVPTTLLAQQH+ENF+DRFA+ PI++EV+SRFK+AKEQ+ +L+ +  G+VDI++
Sbjct: 657  GKQVAILVPTTLLAQQHYENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVI 716

Query: 714  GTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMS 773
            GTHKLL SE +F +LGLLI+DEEHRFGVRQKEK+KA+RA++DILTLTATPIPRTLNMAMS
Sbjct: 717  GTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMS 776

Query: 774  GMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAAD 833
            GMRDLSIIATPPA+RLA+KTFVR+ +D+ +REA+LREI+RGGQVYFLHN VETI+K A +
Sbjct: 777  GMRDLSIIATPPAKRLAVKTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRARE 836

Query: 834  LEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRA 893
            +E L+PEAR+  AHGQMRER+LEKVM+DFYHQ++N+LVCTTIIETGIDVP+ANTII++RA
Sbjct: 837  IEALLPEARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERA 896

Query: 894  DSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATH 953
            D+ GLAQLHQLRGRVGRSHHQAYAYL+ P PK +TKDA+KRLEAI +LEDLGAGF LAT 
Sbjct: 897  DNFGLAQLHQLRGRVGRSHHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQ 956

Query: 954  DLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRL 1013
            DLEIRGAGELLG+EQSG I  +GFTLYMEMLE AV++LK GKEP+LD +LR Q E+++R+
Sbjct: 957  DLEIRGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRI 1016

Query: 1014 PALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKL 1073
            PALLPE+Y+ D+N RLS+YK+IA+ A+   L ELKVELIDRFG LP A  NL+ ++  K 
Sbjct: 1017 PALLPEDYVGDVNIRLSLYKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKH 1076

Query: 1074 NAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVER 1133
             A  L + KIE H +GG +EF  +  ++P F++ LLQSQP+   MDGP+KLKF +P    
Sbjct: 1077 QATALGIAKIEMHAKGGSLEFNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETD 1136

Query: 1134 SARIQFVADMLKNFQQNVL 1152
              R+  ++ ++    Q+ L
Sbjct: 1137 KDRLALLSLIISQLMQHRL 1155