Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

 Score = 1053 bits (2724), Expect = 0.0
 Identities = 569/1136 (50%), Positives = 757/1136 (66%), Gaps = 14/1136 (1%)

Query: 15   AGDKKAIGNLHGASLALAIAELAN-AHTSHTLLAV--PDPQTALKLLHEVEQFSHS-EVA 70
            +G++  +  L G++ ALA+A L + A +   LLAV    P  A +LL E+  F+   +V 
Sbjct: 68   SGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFAPDLKVR 127

Query: 71   LFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130
            L PDWETLPYDNFSPH D++S+R++ LY +      + +VP +T + R +P  +L  +T 
Sbjct: 128  LLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPSYLAAYTF 187

Query: 131  IVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDE 190
             +K+G+    ++ R QL  + Y HV QV  PGEY+ RG ++DLFPMGS+ P+RID FD+E
Sbjct: 188  FLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYRIDLFDEE 247

Query: 191  IDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQV 250
            I+T+RTFD D QRS+  + EIRLLPA EFP        FR R+R+ FE       +Y  V
Sbjct: 248  IETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAKSGIYKDV 307

Query: 251  SKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNID 310
            S G   AGIEYW PLFFE + TLFDYLP ++ L    ++  A+  F  D   RY+    D
Sbjct: 308  SNGVPSAGIEYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRDTQSRYNMLAGD 367

Query: 311  PLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKE 370
              RPLLPP EL+L +++ F   K   ++ L  +P E     M      +P +AVE + ++
Sbjct: 368  KARPLLPPAELFLSEEQFFVAAKDYAKLIL-GTPAE----GMPPLATAVPTVAVERRAED 422

Query: 371  PLAALRQFSEQFTGK-IIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLV 429
            PL AL+QF     G+  +   ES GRRE L +LL    L+P +  DF+         +L 
Sbjct: 423  PLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLGGDAPLALG 482

Query: 430  LGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVV 489
            +   + GF    + +A+I E++L       RR +++ +   + D  +R+L ELK G PVV
Sbjct: 483  VAPLQSGFCL--DGLAIITETELYAGSP-NRRSRQNAQRRASMDNWLRDLTELKVGDPVV 539

Query: 490  HIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHK 549
            H  HGIGRY+GL  L+ G   +E++ L Y NEAKLYVPVS L++ISRYSG   +AA LH 
Sbjct: 540  HESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEPDAAPLHS 599

Query: 550  LGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDD 609
            LG   W KA++KAAE+ RD AAELL +YA R  + G  F      Y  F   F FEET+D
Sbjct: 600  LGSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGFGFEETED 659

Query: 610  QAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQ 669
            QA AI AV+ DM   K MDRLVCGDVGFGKTEVA+RAAFVA   GKQVAVL PTTLL +Q
Sbjct: 660  QATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPTTLLCEQ 719

Query: 670  HFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLG 729
            H++ F+DRFA+ P+++  LSRFK+AKE  Q ++D+  GK+DI++GTHKLLS E++F  LG
Sbjct: 720  HYQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKEMKFDRLG 779

Query: 730  LLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 789
            L+++DEEHRFGVRQKE +KA+RA+VD+LTLTATPIPRTL M++ G+RD S+IAT P +RL
Sbjct: 780  LVMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQKRL 839

Query: 790  AIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQ 849
            AIKTFV +  D +IREAVLRE+ RGGQVYFLHN+V+TID +   L+ LVPEARI V HGQ
Sbjct: 840  AIKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEARIVVGHGQ 899

Query: 850  MRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVG 909
            M ERELE+VM DF  QR NLL+CTTIIETGID P ANTI+++RA+  GLAQLHQLRGRVG
Sbjct: 900  MNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLHQLRGRVG 959

Query: 910  RSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQS 969
            RSHHQAY+YLL    KA+TK A +RLEAI  +E+LGAGF LA HDLEIRGAGE+LGE QS
Sbjct: 960  RSHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGEVLGENQS 1019

Query: 970  GQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRL 1029
            G++Q VGF LY EML +AV ALK G+EP L   L   TE+ +  PALLP+ Y PD++ RL
Sbjct: 1020 GEMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYAPDVHERL 1079

Query: 1030 SMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERG 1089
            ++YK++++  +++++  L+ ELIDRFG+LP     LLA   L+L A  L + K++A    
Sbjct: 1080 TLYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVKLDATASQ 1139

Query: 1090 GYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLK 1145
              V+F PN  I P+ +++L+Q   +   + G  KL     +     R+  V D+ +
Sbjct: 1140 LTVQFCPNPPIEPIRIIELIQKN-RHFKLAGQDKLAVVRHMPTLKERVDAVKDLFR 1194