Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

 Score =  561 bits (1446), Expect = e-163
 Identities = 302/661 (45%), Positives = 420/661 (63%), Gaps = 27/661 (4%)

Query: 431  GSAERGFIYGDNQVALICESDLLGDRVIQRRRKK---DRKNVTNSDAVIRNLAELKPGQP 487
            G    G I     + +I E+DL G RV     K+    R+N+ +  A       L  G  
Sbjct: 471  GPLRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLA-------LTAGDL 523

Query: 488  VVHIDHGIGRYLGLQTLEAGGMVSEYVMLEY---------QNEAKLYVPVSSLNLISRYS 538
            VVH  HGIGR++ +     GG   EY++LEY         +N  KLYVP+ SL+ +SRY 
Sbjct: 524  VVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYV 583

Query: 539  GGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATF 598
            GG  +A  L +LGG  W   + KA   VR++A EL+ +YAKR+  PG  F  D    A  
Sbjct: 584  GG--QAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEL 641

Query: 599  KATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVA 658
            +  F F ET DQ  AI  V +DM +   MDR++CGDVG+GKTE+A+RAAF A  +GKQVA
Sbjct: 642  EDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVA 701

Query: 659  VLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKL 718
            VLVPTTLLA QH + F +R +  P+ ++ LSRF  A E + ++  +ADG VDI++GTH+L
Sbjct: 702  VLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRL 761

Query: 719  LSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDL 778
            L + +R+ DLGL++VDEE RFGV  KE +K++R  VD+LT++ATPIPRTL M+++G+R++
Sbjct: 762  LQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREM 821

Query: 779  SIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLV 838
            S I TPP  R  + T+V   +D  I  A+ RE++R GQ +++HN+V +ID  AA + +LV
Sbjct: 822  STILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELV 881

Query: 839  PEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGL 898
            PEAR+ VAHGQM E  LE  +  F+++  ++LVCTTI+ETG+D+  ANT+I++RAD+ GL
Sbjct: 882  PEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGL 941

Query: 899  AQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIR 958
            +QLHQLRGRVGRS  + YAY L PP   +T+ A  RL  IA   +LGAG  +A  DLEIR
Sbjct: 942  SQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIR 1001

Query: 959  GAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDD----LLREQTEVEMRLP 1014
            GAG +LG EQSG +  VGF LY+ ++ +A+E  +     A D        E  +V + LP
Sbjct: 1002 GAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLP 1061

Query: 1015 --ALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELK 1072
              A LP +YI     RL  Y+++A+ +S  E+A +  EL DR+G LP+ A  L A+A L+
Sbjct: 1062 VDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLR 1121

Query: 1073 L 1073
            L
Sbjct: 1122 L 1122



 Score = 91.7 bits (226), Expect = 3e-22
 Identities = 84/277 (30%), Positives = 127/277 (45%), Gaps = 24/277 (8%)

Query: 27  ASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPDWETLPYDNFSPH 86
           AS  L +A  A A     L+     + A  L  E+       VAL P WETLP++  SP 
Sbjct: 46  ASARLLVAS-ALARQGPLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPG 104

Query: 87  QDIISDRISRLYQL---------PSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDH 137
            D +  R+  L +L         P L  G+ +  V +LLQ  +P+  +++  L +  GD 
Sbjct: 105 VDTVGTRLMALRRLAHPDDAQLGPPL--GVVVTSVRSLLQPMTPQLGMME-PLTLTVGDE 161

Query: 138 FSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTF 197
              D +  +L   +Y  VD V   GE+A RG ILD+F   +  P R++F+ DEI  +R F
Sbjct: 162 SPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMF 221

Query: 198 DPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPES--------VYSQ 249
              +QRSI E+D I  L A        + E+ R R  Q        ES        + ++
Sbjct: 222 SVADQRSIPEID-IHTLVAFACRELLLS-EDVRARAAQLAARHPAAESTVTGSASDMLAK 279

Query: 250 VSKGTWPAGIEYWQPLFFEHSETLF-DYLPANSQLLV 285
           +++G    G+E   P+ +     L  D LP  + +LV
Sbjct: 280 LAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLV 316